Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023731.1 Length=53526 Score E Sequences producing significant alignments: (Bits) Value seq103996 82.4 3e-11 seq37623 82.4 3e-11 seq105772 80.6 9e-11 >seq103996 Length=666 Score = 82.4 bits (90), Expect = 3e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 6015 GTAGCTCAATCGGTAGAGCAGCGGTCTCCAAAGCCGCCGGTTCCAGGTTCGAGTCCTG 6072 || ||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||| Sbjct 456 GTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 399 >seq37623 Length=2350 Score = 82.4 bits (90), Expect = 3e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 6015 GTAGCTCAATCGGTAGAGCAGCGGTCTCCAAAGCCGCCGGTTCCAGGTTCGAGTCCTG 6072 || ||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||| Sbjct 1361 GTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 1304 >seq105772 Length=647 Score = 80.6 bits (88), Expect = 9e-11 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 6015 GTAGCTCAATCGGTAGAGCAGCGGTCTCCAAAGCCGCCGGTTCCAGGTTCGAGTCCTGGC 6074 || ||||||| ||||||||||||||||||||| |||| |||| ||||||| ||||||| | Sbjct 556 GTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTGTC 497 Query 6075 AGGCCCGCA 6083 | || ||| Sbjct 496 CGCCCTGCA 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170890074479584