Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq69458 159 2e-34 seq111358 127 1e-24 seq58751 109 4e-19 seq101272 100 2e-16 seq89170 96.9 2e-15 >seq69458 Length=1299 Score = 159 bits (176), Expect = 2e-34 Identities = 210/289 (73%), Gaps = 3/289 (1%) Strand=Plus/Minus Query 94482 CGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGAT 94541 ||||||||| | | |||| ||| || | ||||| |||||| || || |||||| | Sbjct 1298 CGGCAGGAACAGCGCGTCGCCCTGACCGACGAGCTTCTCGGCCCCCGGCTGGTCCAGCAC 1239 Query 94542 CACCCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTT 94601 |||||| || | ||| || || ||||||| ||||||||||||||||||| ||| Sbjct 1238 GACCCGGGAGTCCGCGAGCGAACTCGTCGCGAACGCCAGCCGCGAGGGCACGTTGGCCTT 1179 Query 94602 GATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCC 94661 |||||| |||||||| || || |||||||| ||||| ||||| || || || || ||||| Sbjct 1178 GATGAGCCCCGTCACGACGTCGACGGAGGGGCGCTGGGTCGCGAGCACCAGGTGGATGCC 1119 Query 94662 GGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTAGCC 94721 ||| || || || ||| | |||||| ||| |||||| || || | | || Sbjct 1118 GGCGGCCCGGGCGAGCTGGGTGATGCGCTGGATGGAGGCCTCGACGTC--GCGCGGGGCG 1061 Query 94722 ACCCATCATGAGGTCCGCGAGTTCATCCACCACTACCACGATGTAGGGG 94770 | ||||||| ||||| ||||| || || || || |||| | ||| ||| Sbjct 1060 A-CCATCATCAGGTCGGCGAGCTCGTCGACGACCACCAGCAGGTACGGG 1013 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 94897 AGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACATTTGGGGTCGATCATGATGAGT 94956 ||||| ||||| || | ||| |||||||| || | |||||||| | || | | Sbjct 826 AGGTGCGGGATGCCCTCGTAGATCGTGAGCTCCACGCGCTTGGGGTCCACCAGCACCATG 767 Query 94957 TTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTG 95016 |||| || ||||| || || ||| | ||| | ||| ||||| | |||||| Sbjct 766 CGGACCTCGTCGGGGGTGGCGCGCATGAGGATCGAGGTGATCATCGAGTTCACGAAGCTC 707 Query 95017 GACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTGGCCAGGTTCAGG 95076 ||||||||||| |||||||| || || || ||||| || |||||||| || |||||| | Sbjct 706 GACTTGCCCGAGCCGGTCGCCCCGGCGACGAGCAGGTGGGGCATCTTCGCGAGGTTCGCG 647 Query 95077 GAGACGTCCTTACCCTCGACGTCCTTGCCCACTGCCACGGTCAACGGATGGT 95128 |||| ||||||||||||||||||| | ||||||| ||| |||| Sbjct 646 ACGACGAAGCCGCCCTCGACGTCCTTGCCCAGCCCGACGGTCATCGGGTGGT 595 >seq111358 Length=586 Score = 127 bits (140), Expect = 1e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 94424 CGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCACCG 94483 ||||||| | ||| ||| | |||||||| || ||||| || ||| || |||| || Sbjct 205 CGATCTCGGCCTCGTTGACCCAGGCGCCCTGGATGCGGATCGCCTTGCTGGCGCCCATCG 146 Query 94484 GCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCA 94543 ||||||| | |||||| ||| || | |||| || || ||| ||| ||||||||||| Sbjct 145 GCAGGAACAGCCCGTCGCCCTGGCCGAGCAGCTTGTCCGCGCCGACCTGGTCCAGGATCA 86 Query 94544 CCCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGA 94603 ||||||| |||||| ||||| |||||| | || || ||||||||| ||||| Sbjct 85 CCCGGCTGTCGGTGGAGGACGACACGGCGAAGGCGAGGCGGCTGGGCACGTTCGCCTTGA 26 Query 94604 TGAGGCCCGTCACCACATCCACGGA 94628 | ||||| || ||||| || ||||| Sbjct 25 TCAGGCCGGTGACCACGTCGACGGA 1 >seq58751 Length=1734 Score = 109 bits (120), Expect = 4e-19 Identities = 197/283 (70%), Gaps = 4/283 (1%) Strand=Plus/Plus Query 94791 GCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCT-CTACGGTGAGCCACC 94849 ||| ||||| || | |||||| || || ||||| ||||||| || | | ||| Sbjct 1275 GCGAACGCCCACCGACGACATCTGGCGATAGCGGTCCTCCATCTGCTCCACCGC-CCATT 1333 Query 94850 GCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGGATAC 94909 ||||| |||||||| | | | || || || ||||| || ||||||||||| Sbjct 1334 TCAGCGCGCGCACCGCCTTGGCCGGGTCGGTGACGACGGGGGACAGCAGGTGGGGGATGT 1393 Query 94910 CGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCCGATCA 94968 ||| |||| | | | ||||| ||| ||||||||||||||||| | | | | || Sbjct 1394 CGTCGTACATGCTCAACTCGA-GCATCTTGGGGTCGATCATGATCATCCGGCACTGTTCG 1452 Query 94969 GGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGAT 95028 || ||| ||||||||||||||| | | ||| |||||| | ||||||||||| Sbjct 1453 GGCGTCAGCCGGTAGAGCAGCGACAGGATCATGCAGTTGAGCCCGACCGACTTGCCCGAG 1512 Query 95029 CCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTGGCCAGGT 95071 ||||| | ||| || ||||||| |||||||| ||| |||| Sbjct 1513 CCGGTGGTGCCCGCAACCAGCAAGTGCGGCATGGGGGCGAGGT 1555 Score = 96.9 bits (106), Expect = 2e-15 Identities = 236/352 (67%), Gaps = 18/352 (5%) Strand=Plus/Plus Query 94418 CGGCCTCGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCC 94477 |||| | || ||| | || || ||||||| ||| || | |||| || ||| | | Sbjct 794 CGGCGTGGACCTCGTCGTCCGACACGAACGGGCCGTGGACGCGGA---CGATGCCCTTGC 850 Query 94478 CCACCGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCA 94537 | | |||| | | | | ||| ||| | |||| ||||||||||| || |||| ||| Sbjct 851 CGCCGGGCATGTAGAGCATGTCGCCCTTGCCCAGCAGCTGCTCGGCCCCCTGCTCGCCCA 910 Query 94538 GGATCACCCGGCTATCGGTGAGGGACGCTG-TGGCG---AACGACAGCCGCGAGGGCACG 94593 |||| || |||| | | ||| || || ||||| | |||| |||| Sbjct 911 GGATGGTGCGCGAATCGATCTTG----CTGGTGACGTGAAACGAGATGCGCGTCGGCAGA 966 Query 94594 TTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGA 94653 ||| |||||||| ||| || | || || || || |||||||||||||||| || ||| Sbjct 967 TTGGCCTTGATGACGCCGGTGATGACGTCGACCGACGGCCGCTGCGTCGCCATGATGAGG 1026 Query 94654 TGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTC 94713 || ||||| ||||| |||||||| ||||| | || || | ||| ||||| | Sbjct 1027 TGGATGCCCGCCGCGCGCGCCTTTTGCGCCAGCCGCTGGATCAGGAACTCGACCTC---C 1083 Query 94714 TTGTAGCCACC--CATCATGAGGTCCGCGAGTTCATCCACCACTACCACGAT 94763 ||| || || |||||| ||||| || || || || || | |||||||| Sbjct 1084 TTG--CCCGCCGTCATCATCAGGTCGGCCAGCTCGTCGACGATCACCACGAT 1133 >seq101272 Length=699 Score = 100 bits (110), Expect = 2e-16 Identities = 216/322 (67%), Gaps = 6/322 (2%) Strand=Plus/Minus Query 96476 GTCGAGCAGGATCGGGTCGACCTCCCCGGCCGGCACGAACTCCACGACGTCAATCACCTT 96535 ||||| | ||| |||||||| || | || |||||||||||| ||||| || ||| | Sbjct 521 GTCGAACCGGACCGGGTCGATCTGCTCGCTCGGCACGAACTCGACGACCTCGATCTCGCG 462 Query 96536 GTTGGTTTCGCTGGGCAGCTCCGCCAAGTCCTCATTGGTCAGTAGGGCGGTTTGCCCGTC 96595 | | ||| |||||| || | ||| || |||| || | | |||| ||| | Sbjct 461 GCTCCGCTCGACGGGCAGGGCCTTGAGGTCGTCGCTGGTGAGGACGACGGTGGTGCCGCC 402 Query 96596 GACCTCGAACACCTTGCCCAGATCGGCCGTGTGGACCTGCTCACCACACGTCTCACAGAC 96655 ||||| || ||||| | | ||||| || |||| || || ||| ||| || Sbjct 401 CTCCTCGTACGCCTTGTCGATGTCGGCGTAGTCGACCGTCTTCCCGCACACCTCGCA--- 345 Query 96656 CTTGTG---GTAGCGAATCCGCCCGCCGTCCTGGACGTGCGCCAGATGGCCCTTCAGGTC 96712 |||| | |||||| || |||||||||||| | ||||| || | || ||| ||| Sbjct 344 CTTGCGCTCGTAGCGGATGCGCCCGCCGTCCGCGCCGTGCACCTGGTGCAGGCTCACGTC 285 Query 96713 GTGTTCCTCGGTGGCCGCGTACATCTTCACCGGCACGTTGACCAACCCGAAGTTTACCGC 96772 ||| |||| ||||| ||| | | ||||| ||||| |||| ||||| | | ||| Sbjct 284 GTGGTCCTGCGTGGCGCTGTAGAGCCGGACCGGGACGTTCACCAGGCCGAACGTGATCGC 225 Query 96773 GCCTGTCCAAACTGCTCGCATG 96794 || ||||| | |||| |||| Sbjct 224 CCCGGTCCAGATCGCTCTCATG 203 >seq89170 Length=865 Score = 96.9 bits (106), Expect = 2e-15 Identities = 211/312 (68%), Gaps = 18/312 (6%) Strand=Plus/Minus Query 96461 CAGGTAGTAGGGTTTGTCGAGCAGGATCGGGTCGACCTCCCCGGCCGGCACGAACTCCAC 96520 |||||||||| ||| || |||||| ||||| || |||| ||||||||||| || Sbjct 332 CAGGTAGTAGCTGCGGTCCAGGCGGATCGTGTCGATCTGGTCGGCGGGCACGAACTCGAC 273 Query 96521 GACGTCAATCACCTTGTTGGTTTCGCTGGGCAGCTCCGCCAAGTCCTCATTGGTCAGTAG 96580 ||||| ||| | | | ||| |||||| | || |||||| ||||| | Sbjct 272 CACGTCGATCTCGCGGCTCCGCTCGACCGGCAGCGACTTCAGGTCCTCCGGCGTCAGCAC 213 Query 96581 GGCGGTTTGCCCGTCGACCTCGAACACCTTGCCCAGATCGGCCGTGTGGACCTGCTCACC 96640 |||| || || || | ||| | ||||| | ||| | || |||| || | || Sbjct 212 CACGGTCTGGTCGCCGGCGTCGTAGGCCTTGTC--GAT-GTCC---TGGAACTCC--ACG 161 Query 96641 ACACGTCTCACAGACCTTG---------TGGTAGCGAATCCGCCCGCCGTCCTGGACGTG 96691 || || | | |||| || | |||||||| || || |||||||| | ||| Sbjct 160 ACCCGGC-CGCAGATCTCGCAGCGGCGCTGGTAGCGGATGCGGCCGCCGTCGGCGTTGTG 102 Query 96692 CGCCAGATGGCCCTTCAGGTCGTGTTCCTCGGTGGCCGCGTACATCTTCACCGGCACGTT 96751 | || | || | |||||||| |||||||| |||||||||| |||||| |||||||| Sbjct 101 CACCTGGTGCAGCGGGAGGTCGTGGTCCTCGGTCGCCGCGTACAGCTTCACGGGCACGTT 42 Query 96752 GACCAACCCGAA 96763 ||||| |||||| Sbjct 41 GACCAGCCCGAA 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339567842602352