Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_023738.1
Length=106327
Score E
Sequences producing significant alignments: (Bits) Value
seq69458 159 2e-34
seq111358 127 1e-24
seq58751 109 4e-19
seq101272 100 2e-16
seq89170 96.9 2e-15
>seq69458
Length=1299
Score = 159 bits (176), Expect = 2e-34
Identities = 210/289 (73%), Gaps = 3/289 (1%)
Strand=Plus/Minus
Query 94482 CGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGAT 94541
||||||||| | | |||| ||| || | ||||| |||||| || || |||||| |
Sbjct 1298 CGGCAGGAACAGCGCGTCGCCCTGACCGACGAGCTTCTCGGCCCCCGGCTGGTCCAGCAC 1239
Query 94542 CACCCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTT 94601
|||||| || | ||| || || ||||||| ||||||||||||||||||| |||
Sbjct 1238 GACCCGGGAGTCCGCGAGCGAACTCGTCGCGAACGCCAGCCGCGAGGGCACGTTGGCCTT 1179
Query 94602 GATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCC 94661
|||||| |||||||| || || |||||||| ||||| ||||| || || || || |||||
Sbjct 1178 GATGAGCCCCGTCACGACGTCGACGGAGGGGCGCTGGGTCGCGAGCACCAGGTGGATGCC 1119
Query 94662 GGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTAGCC 94721
||| || || || ||| | |||||| ||| |||||| || || | | ||
Sbjct 1118 GGCGGCCCGGGCGAGCTGGGTGATGCGCTGGATGGAGGCCTCGACGTC--GCGCGGGGCG 1061
Query 94722 ACCCATCATGAGGTCCGCGAGTTCATCCACCACTACCACGATGTAGGGG 94770
| ||||||| ||||| ||||| || || || || |||| | ||| |||
Sbjct 1060 A-CCATCATCAGGTCGGCGAGCTCGTCGACGACCACCAGCAGGTACGGG 1013
Score = 116 bits (128), Expect = 3e-21
Identities = 165/232 (71%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 94897 AGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACATTTGGGGTCGATCATGATGAGT 94956
||||| ||||| || | ||| |||||||| || | |||||||| | || | |
Sbjct 826 AGGTGCGGGATGCCCTCGTAGATCGTGAGCTCCACGCGCTTGGGGTCCACCAGCACCATG 767
Query 94957 TTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTG 95016
|||| || ||||| || || ||| | ||| | ||| ||||| | ||||||
Sbjct 766 CGGACCTCGTCGGGGGTGGCGCGCATGAGGATCGAGGTGATCATCGAGTTCACGAAGCTC 707
Query 95017 GACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTGGCCAGGTTCAGG 95076
||||||||||| |||||||| || || || ||||| || |||||||| || |||||| |
Sbjct 706 GACTTGCCCGAGCCGGTCGCCCCGGCGACGAGCAGGTGGGGCATCTTCGCGAGGTTCGCG 647
Query 95077 GAGACGTCCTTACCCTCGACGTCCTTGCCCACTGCCACGGTCAACGGATGGT 95128
|||| ||||||||||||||||||| | ||||||| ||| ||||
Sbjct 646 ACGACGAAGCCGCCCTCGACGTCCTTGCCCAGCCCGACGGTCATCGGGTGGT 595
>seq111358
Length=586
Score = 127 bits (140), Expect = 1e-24
Identities = 151/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 94424 CGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCACCG 94483
||||||| | ||| ||| | |||||||| || ||||| || ||| || |||| ||
Sbjct 205 CGATCTCGGCCTCGTTGACCCAGGCGCCCTGGATGCGGATCGCCTTGCTGGCGCCCATCG 146
Query 94484 GCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCA 94543
||||||| | |||||| ||| || | |||| || || ||| ||| |||||||||||
Sbjct 145 GCAGGAACAGCCCGTCGCCCTGGCCGAGCAGCTTGTCCGCGCCGACCTGGTCCAGGATCA 86
Query 94544 CCCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGA 94603
||||||| |||||| ||||| |||||| | || || ||||||||| |||||
Sbjct 85 CCCGGCTGTCGGTGGAGGACGACACGGCGAAGGCGAGGCGGCTGGGCACGTTCGCCTTGA 26
Query 94604 TGAGGCCCGTCACCACATCCACGGA 94628
| ||||| || ||||| || |||||
Sbjct 25 TCAGGCCGGTGACCACGTCGACGGA 1
>seq58751
Length=1734
Score = 109 bits (120), Expect = 4e-19
Identities = 197/283 (70%), Gaps = 4/283 (1%)
Strand=Plus/Plus
Query 94791 GCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCT-CTACGGTGAGCCACC 94849
||| ||||| || | |||||| || || ||||| ||||||| || | | |||
Sbjct 1275 GCGAACGCCCACCGACGACATCTGGCGATAGCGGTCCTCCATCTGCTCCACCGC-CCATT 1333
Query 94850 GCAGCGTTTTCACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGGATAC 94909
||||| |||||||| | | | || || || ||||| || |||||||||||
Sbjct 1334 TCAGCGCGCGCACCGCCTTGGCCGGGTCGGTGACGACGGGGGACAGCAGGTGGGGGATGT 1393
Query 94910 CGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCCGATCA 94968
||| |||| | | | ||||| ||| ||||||||||||||||| | | | | ||
Sbjct 1394 CGTCGTACATGCTCAACTCGA-GCATCTTGGGGTCGATCATGATCATCCGGCACTGTTCG 1452
Query 94969 GGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGAT 95028
|| ||| ||||||||||||||| | | ||| |||||| | |||||||||||
Sbjct 1453 GGCGTCAGCCGGTAGAGCAGCGACAGGATCATGCAGTTGAGCCCGACCGACTTGCCCGAG 1512
Query 95029 CCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTGGCCAGGT 95071
||||| | ||| || ||||||| |||||||| ||| ||||
Sbjct 1513 CCGGTGGTGCCCGCAACCAGCAAGTGCGGCATGGGGGCGAGGT 1555
Score = 96.9 bits (106), Expect = 2e-15
Identities = 236/352 (67%), Gaps = 18/352 (5%)
Strand=Plus/Plus
Query 94418 CGGCCTCGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCC 94477
|||| | || ||| | || || ||||||| ||| || | |||| || ||| | |
Sbjct 794 CGGCGTGGACCTCGTCGTCCGACACGAACGGGCCGTGGACGCGGA---CGATGCCCTTGC 850
Query 94478 CCACCGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCA 94537
| | |||| | | | | ||| ||| | |||| ||||||||||| || |||| |||
Sbjct 851 CGCCGGGCATGTAGAGCATGTCGCCCTTGCCCAGCAGCTGCTCGGCCCCCTGCTCGCCCA 910
Query 94538 GGATCACCCGGCTATCGGTGAGGGACGCTG-TGGCG---AACGACAGCCGCGAGGGCACG 94593
|||| || |||| | | ||| || || ||||| | |||| ||||
Sbjct 911 GGATGGTGCGCGAATCGATCTTG----CTGGTGACGTGAAACGAGATGCGCGTCGGCAGA 966
Query 94594 TTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGA 94653
||| |||||||| ||| || | || || || || |||||||||||||||| || |||
Sbjct 967 TTGGCCTTGATGACGCCGGTGATGACGTCGACCGACGGCCGCTGCGTCGCCATGATGAGG 1026
Query 94654 TGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTC 94713
|| ||||| ||||| |||||||| ||||| | || || | ||| ||||| |
Sbjct 1027 TGGATGCCCGCCGCGCGCGCCTTTTGCGCCAGCCGCTGGATCAGGAACTCGACCTC---C 1083
Query 94714 TTGTAGCCACC--CATCATGAGGTCCGCGAGTTCATCCACCACTACCACGAT 94763
||| || || |||||| ||||| || || || || || | ||||||||
Sbjct 1084 TTG--CCCGCCGTCATCATCAGGTCGGCCAGCTCGTCGACGATCACCACGAT 1133
>seq101272
Length=699
Score = 100 bits (110), Expect = 2e-16
Identities = 216/322 (67%), Gaps = 6/322 (2%)
Strand=Plus/Minus
Query 96476 GTCGAGCAGGATCGGGTCGACCTCCCCGGCCGGCACGAACTCCACGACGTCAATCACCTT 96535
||||| | ||| |||||||| || | || |||||||||||| ||||| || ||| |
Sbjct 521 GTCGAACCGGACCGGGTCGATCTGCTCGCTCGGCACGAACTCGACGACCTCGATCTCGCG 462
Query 96536 GTTGGTTTCGCTGGGCAGCTCCGCCAAGTCCTCATTGGTCAGTAGGGCGGTTTGCCCGTC 96595
| | ||| |||||| || | ||| || |||| || | | |||| ||| |
Sbjct 461 GCTCCGCTCGACGGGCAGGGCCTTGAGGTCGTCGCTGGTGAGGACGACGGTGGTGCCGCC 402
Query 96596 GACCTCGAACACCTTGCCCAGATCGGCCGTGTGGACCTGCTCACCACACGTCTCACAGAC 96655
||||| || ||||| | | ||||| || |||| || || ||| ||| ||
Sbjct 401 CTCCTCGTACGCCTTGTCGATGTCGGCGTAGTCGACCGTCTTCCCGCACACCTCGCA--- 345
Query 96656 CTTGTG---GTAGCGAATCCGCCCGCCGTCCTGGACGTGCGCCAGATGGCCCTTCAGGTC 96712
|||| | |||||| || |||||||||||| | ||||| || | || ||| |||
Sbjct 344 CTTGCGCTCGTAGCGGATGCGCCCGCCGTCCGCGCCGTGCACCTGGTGCAGGCTCACGTC 285
Query 96713 GTGTTCCTCGGTGGCCGCGTACATCTTCACCGGCACGTTGACCAACCCGAAGTTTACCGC 96772
||| |||| ||||| ||| | | ||||| ||||| |||| ||||| | | |||
Sbjct 284 GTGGTCCTGCGTGGCGCTGTAGAGCCGGACCGGGACGTTCACCAGGCCGAACGTGATCGC 225
Query 96773 GCCTGTCCAAACTGCTCGCATG 96794
|| ||||| | |||| ||||
Sbjct 224 CCCGGTCCAGATCGCTCTCATG 203
>seq89170
Length=865
Score = 96.9 bits (106), Expect = 2e-15
Identities = 211/312 (68%), Gaps = 18/312 (6%)
Strand=Plus/Minus
Query 96461 CAGGTAGTAGGGTTTGTCGAGCAGGATCGGGTCGACCTCCCCGGCCGGCACGAACTCCAC 96520
|||||||||| ||| || |||||| ||||| || |||| ||||||||||| ||
Sbjct 332 CAGGTAGTAGCTGCGGTCCAGGCGGATCGTGTCGATCTGGTCGGCGGGCACGAACTCGAC 273
Query 96521 GACGTCAATCACCTTGTTGGTTTCGCTGGGCAGCTCCGCCAAGTCCTCATTGGTCAGTAG 96580
||||| ||| | | | ||| |||||| | || |||||| ||||| |
Sbjct 272 CACGTCGATCTCGCGGCTCCGCTCGACCGGCAGCGACTTCAGGTCCTCCGGCGTCAGCAC 213
Query 96581 GGCGGTTTGCCCGTCGACCTCGAACACCTTGCCCAGATCGGCCGTGTGGACCTGCTCACC 96640
|||| || || || | ||| | ||||| | ||| | || |||| || | ||
Sbjct 212 CACGGTCTGGTCGCCGGCGTCGTAGGCCTTGTC--GAT-GTCC---TGGAACTCC--ACG 161
Query 96641 ACACGTCTCACAGACCTTG---------TGGTAGCGAATCCGCCCGCCGTCCTGGACGTG 96691
|| || | | |||| || | |||||||| || || |||||||| | |||
Sbjct 160 ACCCGGC-CGCAGATCTCGCAGCGGCGCTGGTAGCGGATGCGGCCGCCGTCGGCGTTGTG 102
Query 96692 CGCCAGATGGCCCTTCAGGTCGTGTTCCTCGGTGGCCGCGTACATCTTCACCGGCACGTT 96751
| || | || | |||||||| |||||||| |||||||||| |||||| ||||||||
Sbjct 101 CACCTGGTGCAGCGGGAGGTCGTGGTCCTCGGTCGCCGCGTACAGCTTCACGGGCACGTT 42
Query 96752 GACCAACCCGAA 96763
||||| ||||||
Sbjct 41 GACCAGCCCGAA 30
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 339567842602352
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