Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023744.1 Length=60588 Score E Sequences producing significant alignments: (Bits) Value seq37323 320 6e-83 seq117163 206 1e-48 seq78026 165 3e-36 seq78025 122 3e-23 >seq37323 Length=3330 Score = 320 bits (354), Expect = 6e-83 Identities = 533/762 (70%), Gaps = 25/762 (3%) Strand=Plus/Minus Query 49743 GTGGCGGGAACAGCTCGGAAGCCTCGGCGGCGGTAACCATTTCATCGAACTATGCCTGGA 49802 ||||||| | ||||| || |||||| |||| ||||| |||||||| | | | | || Sbjct 1901 GTGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCGTCGA 1842 Query 49803 CGAAACCGGCCGGGTGTGGCTGTTCCTGCACTCCGGGTCGCGTGGCGTCGGCAACAAGAT 49862 ||| |||| ||||||||||||||||||||| || || ||||| |||||| ||| Sbjct 1841 CGAGACCGATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAACCGGAT 1782 Query 49863 CGCCCAAAAGCACATCAAGGTCGCGCAGAAACTCATGGACCGCTGGTGGATTCAGCTCCC 49922 |||||| |||||||||||||||||||| ||| || |||||| ||||| || Sbjct 1781 CGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGCTGTGGATCCAGCTGCC 1722 Query 49923 AAGCCCCGACCTGGCGTACTTGCCGCAAGGCACACCGGAGTTCGCCGACTATCTGCGGGA 49982 || ||||||||| ||| || | | ||||| ||| |||||| | ||| | || Sbjct 1721 CGACCGCGACCTGGCCTACCTGGTGGAGGGCACGCCGCAGTTCGACCGCTACATCGCCGA 1662 Query 49983 GCTGCACTGGGCGCAGCGGTTCGCGCTAGAGAACCGCGCCGAAATGATGGACCGTTTCGC 50042 |||| ||||||||||| ||||| || |||||||| || ||||||||||| || Sbjct 1661 ACTGCGATGGGCGCAGCGCTTCGCCCTGCTGAACCGCGAGGAGATGATGGACCG---CG- 1606 Query 50043 TATCGTGTTCGGCGAGTGGATCGGGCACCCCACCGGCGGGGCGCTGGTGGAAACCA--CG 50100 ||||| || || || ||||| | || | |||| || ||| | || Sbjct 1605 --TCGTGC---GCCAGGTCTCCGAGCACCTC---GGTGCGGCGGTGCAGGAGCGCGAGCG 1554 Query 50101 G-TGAACACGCACCACAACTACACGACGCAGGAACGGCACGGCGGCCGCGACGTGTGGCT 50159 | | ||| |||||||||| |||| |||||| |||||| |||||| ||||| ||||| Sbjct 1553 GATCAACTGCCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCCGTGACGTCTGGCT 1494 Query 50160 GACCCGCAAGGGCGCCATCGACGCGCACGCCGGCGTGATGGGCCTGATCCCGGGCAGCAT 50219 | ||||||||||||||||| | |||| |||| | ||||||||||| || || Sbjct 1493 GTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGGCGACCTCGGCCTGATCCCCGGGTCGAT 1434 Query 50220 GGGCACCCCGTCATACGTGGTGCGCGGCAAGGGCAACCCGGCCGGGCTGTGCTCGGCGCC 50279 ||| ||| | || ||||||||| || ||| ||| | | ||| |||| |||| Sbjct 1433 GGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGCGACCGGATGGCGCTCGACTCGTCGCC 1374 Query 50280 GCACGGCGCCGGCCGCCGGCATTCCCGCACCCAAGCCCGGAAGCTGTTCAC---CGAGGC 50336 |||||||||||| ||| || || || | | || |||||| |||||| |||| Sbjct 1373 GCACGGCGCCGGGCGCGTGCTGTCGCGGTCGAAGGCGCGGAAGGCGTTCACGATCGAG-- 1316 Query 50337 CGACCTCGCCGACCGGATGCAGGGTATCGAGTACCGGCACGGGGACGCGTGGGTTGACGA 50396 | || ||| |||| ||| ||||||| |||| || || || | | ||||| Sbjct 1315 -CAGCTGCGCGAGGCGATGACGGGCATCGAGTTCCGGGACACCGAGGCCTTCCTGGACGA 1257 Query 50397 AATCCCGGACGCCTACAAGCCAATTCAGACC--GTGATGGCCGACGCCGCCGACCTCGTG 50454 |||||| | ||||||||||| || |||| |||||||||||||| |||||||| || Sbjct 1256 GATCCCGCAGGCCTACAAGCCGAT--CGACCAGGTGATGGCCGACGCGGCCGACCTGGTC 1199 Query 50455 GAGGTTGTGCACGAGCTGCGGCAGATTCTCAACGTCAAGGGC 50496 || |||| ||||| ||| | ||||||| |||||| Sbjct 1198 ACCGTGCGGCACACCCTGCGCCAGCTGGTCAACGTGAAGGGC 1157 Score = 172 bits (190), Expect = 2e-38 Identities = 193/252 (77%), Gaps = 7/252 (3%) Strand=Plus/Minus Query 49358 TCACACTGGACCAGGCCAAGCAGACCGCCGGCC-TGCCGTTCGTCCACCCGCATGTGGCG 49416 |||| || || ||||| ||| || | || || |||| ||| |||||||||| |||| Sbjct 2649 TCACGCTCGAGCAGGCGCAGCGCAC-GTCGACCATGCCCTTCATCCACCCGCACCTGGCC 2591 Query 49417 CTGATGCCCGACGCGCACGCCGGCAAGGGTTCATCGGTCGGCACCGTCATCCCGACTATC 49476 |||||||||||||||||| || || | |||||||| | || |||||||| || Sbjct 2590 CTGATGCCCGACGCGCACCTGGGGCTCGGCGCCACGGTCGGCTCGGTGATCCCGACGCTC 2531 Query 49477 GACGCCGTGATCCCGGCCGCGGTGGGCGTGGACATCGGCTGCGGGATGATCGCCGCCCGC 49536 | ||||||||| |||||||||||||| |||||||||||||||||||||||||| | |||| Sbjct 2530 GGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACATCGGCTGCGGGATGATCGCGGTCCGC 2471 Query 49537 AC-CATCTACACCGAGGACGACCTGGA---CGGCCGGGACCTCGCCGCGCTGCGGCACGC 49592 || || | |||| | ||||||||| | || | ||||| |||| |||||||| Sbjct 2470 ACGCAGTTCGACCG-GTCCGACCTGGAGGCCCGCGGCGACCTGGCCGGCCTGCGGCAGCA 2412 Query 49593 CATCGAGGGCGC 49604 |||||| |||| Sbjct 2411 GATCGAGCGCGC 2400 >seq117163 Length=525 Score = 206 bits (228), Expect = 1e-48 Identities = 354/504 (70%), Gaps = 21/504 (4%) Strand=Plus/Plus Query 49744 TGGCGGGAACAGCTCGGAAGCCTCGGCGGCGGTAACCATTTCATCGAACTATGCCTGGAC 49803 |||| | |||||| || | ||| || || ||||| |||||||| | | | ||||| Sbjct 25 TGGCCGCTACAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCTCCGTGGAC 84 Query 49804 GAAACCGGCCGGGTGTGGCTGTTCCTGCACTCCGGGTCGCGTGGCGTCGGCAACAAGATC 49863 || | |||||||||| |||||| ||||| ||| || |||||||||||| |||| Sbjct 85 GAGGAGGACCGGGTGTGGGCGTTCCTCCACTCGGGGAGCCGCGGCGTCGGCAACCGGATC 144 Query 49864 GCCCAAAAGCACATCAAGGTCGCGCAGAAACTCATGGACCGCTGGTGGATTCAGCTCCCA 49923 || || ||||||| ||||||||||| || ||| |||||||| | ||||| Sbjct 145 GCGCAGGCGCACATCGAGGTCGCGCAGGCCCTGATGACGAAGTGGTGGATCGATCTCCCG 204 Query 49924 AGCCCCGACCTGGCGTACTTGCCGCAAGGCACACCGGAGTTCG-CCG--ACTATCTGCGG 49980 || |||||| || ||| || | | || || ||||||||| ||| || ||| || Sbjct 205 CACCGCGACCTCGCCTACCTGGTGGAGGGGACGGCGGAGTTCGACCGGTAC-ATC-GC-C 261 Query 49981 GAGCTGCACTGGGCGCAGCGGTTCGCGCTAGAGAACCGCGCCGAAATGATGGACCGTTTC 50040 ||||||| |||||||||||||||||||| | ||||||| || ||||||||||| || Sbjct 262 GAGCTGCGGTGGGCGCAGCGGTTCGCGCTGGTCAACCGCGAGGAGATGATGGACCGCGTC 321 Query 50041 GCTATCGTGTTCGGCGAGTGGATCGGGCACCCCACCGGCGGGGCGCTGGTGGA--AACCA 50098 || |||| || || ||||| ||||| ||| | ||||| | Sbjct 322 --------GTCCGGC-AGCTCTCCGAGCACC---TCGGCGAGGCCGTCGTGGAGCAGGAG 369 Query 50099 CGG-TGAACACGCACCACAACTACACGACGCAGGAACGGCACGGCGGCCGCGACGTGTGG 50157 ||| | |||||||||||||||| |||| |||||| |||||| |||| | ||| ||| Sbjct 370 CGGATCAACACGCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCAGGACCGTCTGG 429 Query 50158 CTGACCCGCAAGGGCGCCATCGACGCGCACGCCGGCGTGATGGGCCTGATCCCGGGCAGC 50217 | | || |||||||| ||| |||| || |||| | || |||||||| || Sbjct 430 GTCTCGCGGAAGGGCGCGATCTCGGCGCGCGAGGGCGAGGCCGGGCTGATCCCCGGATCG 489 Query 50218 ATGGGCACCCCGTCATACGTGGTG 50241 ||||||||| | || ||||||||| Sbjct 490 ATGGGCACCGCCTCCTACGTGGTG 513 >seq78026 Length=538 Score = 165 bits (182), Expect = 3e-36 Identities = 277/396 (70%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 50110 CACCACAACTACACGACGCAGGAACGGCACGGCGGCCGCGACGTGTGGCTGACCCGCAAG 50169 |||||||||||||| ||||||| |||| |||| ||| ||||| |||||||| Sbjct 64 CACCACAACTACACCGCGCAGGAGAAGCACTTCGGCAAGACCGTCTGGCTCTCCCGCAAG 123 Query 50170 GGCGCCATCGACGCGCACGCCGGCGTGATGGGCCTGATCCCGGGCAGCATGGGCACCCCG 50229 || || ||||||||| ||||||| | || |||||||| || ||||| | || Sbjct 124 GGGGCGATCGACGCGAGCGCCGGCCGGCCCGGGCTGATCCCCGGGTCGATGGGAGCGGCG 183 Query 50230 TCATACGTGGTGCGCGGCAAGGGCAACCCGGCCGGGCTGTGC-TCGGCGCCGCACGGCGC 50288 || ||||| || |||| ||||||||||| || |||| | | || |||||||| || Sbjct 184 TCGTACGTCGTCGAGGGCAGGGGCAACCCGGTCGCGCTGCACAGCAGC-CCGCACGGGGC 242 Query 50289 CGGCCGCCGGCATTCCCGCACCCAAGCCCGGAAGCTGTTCACCGAGGCCGACCTCGCCGA 50348 || ||| | | || || || || || |||| |||||| | ||| |||| || Sbjct 243 GGGGCGCGAGTACTCGCGGTCCGCGGCGCGCAAGCGCTTCACCCGTGACGATCTCGACGC 302 Query 50349 CCGGATGCAGGGTATCGAGTACCGGCACGG--GGACGCGTGGGTTGACGAAATCCCGGAC 50406 || ||| || ||||||| || ||| |||||||| | |||||| ||| ||| Sbjct 303 GCGCATGACCGGCATCGAGT--GGGGCCGGTCGGACGCGTTCCTCGACGAACACCCCGAC 360 Query 50407 GCCTACAAGCCAATTCAGACCGTGATGGCCGACGCCGCCGACCTCGTGGAGGTTGTGCAC 50466 || |||||| || | || ||||||||||| ||||||||||| || |||| Sbjct 361 GCGTACAAGGACATCGACGTGGTCATGGCCGACGCGGCCGACCTCGTCAGCGTCCGGCAC 420 Query 50467 GAGCTGCGGCAGATTCTCAACGTCAAGGGCAAGTGA 50502 |||||| ||||| |||||||||||||| | ||| Sbjct 421 ACGCTGCGACAGATCGTCAACGTCAAGGGCGACTGA 456 >seq78025 Length=530 Score = 122 bits (134), Expect = 3e-23 Identities = 292/430 (68%), Gaps = 29/430 (7%) Strand=Plus/Plus Query 49463 TCATCCCGACTATCGACGCCGTGATCCCGGCCGCGGTGGGCGTGGACATCGGCTGCGGGA 49522 ||||||| || | | ||| | |||||||| ||||| ||||| |||||||| ||||||| Sbjct 1 TCATCCCCACGCTGGGCGCGATCATCCCGGCGGCGGTCGGCGTCGACATCGGGTGCGGGA 60 Query 49523 TGATCGCCGCCCGCACCATCTACACCGAGGACGACCTGGACGGCCGG-GACCTCGCCGCG 49581 |||| |||| ||||||| | ||||| || || | | | || | |||| ||| | Sbjct 61 TGATGGCCGTCCGCACCCCGTTCACCGCCGAGGAGTTCG-CAGCGGTCGACCGCGCGGAA 119 Query 49582 CTGCGGCACGCCATCGAGGGCGCGATCCCGCTGTCGCCGGGCAACTACAACCGCGACACC 49641 |||| ||||||| || | | ||||||||| |||| ||||||| || | | Sbjct 120 CTGCACGCCGCCATCAGCCGCACCGTGCCGCTGTCGGCGGGTCGCTACAACACCGTCGTC 179 Query 49642 GATCGTTTCCCGTGCACCGCCGGCCGTATCGCCACCCTGACCGACCTCGCCGGCCGCGGC 49701 || || ||||||| || || ||| || || | ||| | |||| ||| Sbjct 180 GA--------CG-GCACCGC-GGTCG---CGC-ACATCGAG-GCCCTGGA-GGCCAAGGC 223 Query 49702 ACGGACGGCATCCCAGC-GGTTGACCTGTCGCACTCACCGAAGTGGCGGGAACAGCTCGG 49760 | || ||| || ||| || | | ||| ||||||| ||||| || Sbjct 224 GGGCGTGG------AGCAGGCCGACG---CGATCGCGCCGG-GTGGCGGCTGCAGCTGGG 273 Query 49761 AAGCCTCGGCGGCGGTAACCATTTCATCGAACTATGCCTGGACGAAACCGGCCGGGTGTG 49820 ||||| ||| ||||| |||||||| | |||| ||||| || ||||||||| Sbjct 274 TTCGCTCGGTTCCGGCAACCACTTCATCGAGGTCAGCCTCGACGAGCTCGACCGGGTGTG 333 Query 49821 GCTGTTCCTGCACTCCGGGTCGCGTGGCGTCGGCAACAAGATCGCCCAAAAGCACATCAA 49880 ||||||||||||||| || ||||| || || ||||||||| |||| ||||||||| Sbjct 334 GCTGTTCCTGCACTCGGGCTCGCGCGGGGTGGGCAACAAGCTCGCGACCCGGCACATCAA 393 Query 49881 GGTCGCGCAG 49890 |||||||||| Sbjct 394 GGTCGCGCAG 403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193452625069900