Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_023744.1
Length=60588
Score E
Sequences producing significant alignments: (Bits) Value
seq37323 320 6e-83
seq117163 206 1e-48
seq78026 165 3e-36
seq78025 122 3e-23
>seq37323
Length=3330
Score = 320 bits (354), Expect = 6e-83
Identities = 533/762 (70%), Gaps = 25/762 (3%)
Strand=Plus/Minus
Query 49743 GTGGCGGGAACAGCTCGGAAGCCTCGGCGGCGGTAACCATTTCATCGAACTATGCCTGGA 49802
||||||| | ||||| || |||||| |||| ||||| |||||||| | | | | ||
Sbjct 1901 GTGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCGTCGA 1842
Query 49803 CGAAACCGGCCGGGTGTGGCTGTTCCTGCACTCCGGGTCGCGTGGCGTCGGCAACAAGAT 49862
||| |||| ||||||||||||||||||||| || || ||||| |||||| |||
Sbjct 1841 CGAGACCGATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAACCGGAT 1782
Query 49863 CGCCCAAAAGCACATCAAGGTCGCGCAGAAACTCATGGACCGCTGGTGGATTCAGCTCCC 49922
|||||| |||||||||||||||||||| ||| || |||||| ||||| ||
Sbjct 1781 CGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGCTGTGGATCCAGCTGCC 1722
Query 49923 AAGCCCCGACCTGGCGTACTTGCCGCAAGGCACACCGGAGTTCGCCGACTATCTGCGGGA 49982
|| ||||||||| ||| || | | ||||| ||| |||||| | ||| | ||
Sbjct 1721 CGACCGCGACCTGGCCTACCTGGTGGAGGGCACGCCGCAGTTCGACCGCTACATCGCCGA 1662
Query 49983 GCTGCACTGGGCGCAGCGGTTCGCGCTAGAGAACCGCGCCGAAATGATGGACCGTTTCGC 50042
|||| ||||||||||| ||||| || |||||||| || ||||||||||| ||
Sbjct 1661 ACTGCGATGGGCGCAGCGCTTCGCCCTGCTGAACCGCGAGGAGATGATGGACCG---CG- 1606
Query 50043 TATCGTGTTCGGCGAGTGGATCGGGCACCCCACCGGCGGGGCGCTGGTGGAAACCA--CG 50100
||||| || || || ||||| | || | |||| || ||| | ||
Sbjct 1605 --TCGTGC---GCCAGGTCTCCGAGCACCTC---GGTGCGGCGGTGCAGGAGCGCGAGCG 1554
Query 50101 G-TGAACACGCACCACAACTACACGACGCAGGAACGGCACGGCGGCCGCGACGTGTGGCT 50159
| | ||| |||||||||| |||| |||||| |||||| |||||| ||||| |||||
Sbjct 1553 GATCAACTGCCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCCGTGACGTCTGGCT 1494
Query 50160 GACCCGCAAGGGCGCCATCGACGCGCACGCCGGCGTGATGGGCCTGATCCCGGGCAGCAT 50219
| ||||||||||||||||| | |||| |||| | ||||||||||| || ||
Sbjct 1493 GTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGGCGACCTCGGCCTGATCCCCGGGTCGAT 1434
Query 50220 GGGCACCCCGTCATACGTGGTGCGCGGCAAGGGCAACCCGGCCGGGCTGTGCTCGGCGCC 50279
||| ||| | || ||||||||| || ||| ||| | | ||| |||| ||||
Sbjct 1433 GGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGCGACCGGATGGCGCTCGACTCGTCGCC 1374
Query 50280 GCACGGCGCCGGCCGCCGGCATTCCCGCACCCAAGCCCGGAAGCTGTTCAC---CGAGGC 50336
|||||||||||| ||| || || || | | || |||||| |||||| ||||
Sbjct 1373 GCACGGCGCCGGGCGCGTGCTGTCGCGGTCGAAGGCGCGGAAGGCGTTCACGATCGAG-- 1316
Query 50337 CGACCTCGCCGACCGGATGCAGGGTATCGAGTACCGGCACGGGGACGCGTGGGTTGACGA 50396
| || ||| |||| ||| ||||||| |||| || || || | | |||||
Sbjct 1315 -CAGCTGCGCGAGGCGATGACGGGCATCGAGTTCCGGGACACCGAGGCCTTCCTGGACGA 1257
Query 50397 AATCCCGGACGCCTACAAGCCAATTCAGACC--GTGATGGCCGACGCCGCCGACCTCGTG 50454
|||||| | ||||||||||| || |||| |||||||||||||| |||||||| ||
Sbjct 1256 GATCCCGCAGGCCTACAAGCCGAT--CGACCAGGTGATGGCCGACGCGGCCGACCTGGTC 1199
Query 50455 GAGGTTGTGCACGAGCTGCGGCAGATTCTCAACGTCAAGGGC 50496
|| |||| ||||| ||| | ||||||| ||||||
Sbjct 1198 ACCGTGCGGCACACCCTGCGCCAGCTGGTCAACGTGAAGGGC 1157
Score = 172 bits (190), Expect = 2e-38
Identities = 193/252 (77%), Gaps = 7/252 (3%)
Strand=Plus/Minus
Query 49358 TCACACTGGACCAGGCCAAGCAGACCGCCGGCC-TGCCGTTCGTCCACCCGCATGTGGCG 49416
|||| || || ||||| ||| || | || || |||| ||| |||||||||| ||||
Sbjct 2649 TCACGCTCGAGCAGGCGCAGCGCAC-GTCGACCATGCCCTTCATCCACCCGCACCTGGCC 2591
Query 49417 CTGATGCCCGACGCGCACGCCGGCAAGGGTTCATCGGTCGGCACCGTCATCCCGACTATC 49476
|||||||||||||||||| || || | |||||||| | || |||||||| ||
Sbjct 2590 CTGATGCCCGACGCGCACCTGGGGCTCGGCGCCACGGTCGGCTCGGTGATCCCGACGCTC 2531
Query 49477 GACGCCGTGATCCCGGCCGCGGTGGGCGTGGACATCGGCTGCGGGATGATCGCCGCCCGC 49536
| ||||||||| |||||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 2530 GGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACATCGGCTGCGGGATGATCGCGGTCCGC 2471
Query 49537 AC-CATCTACACCGAGGACGACCTGGA---CGGCCGGGACCTCGCCGCGCTGCGGCACGC 49592
|| || | |||| | ||||||||| | || | ||||| |||| ||||||||
Sbjct 2470 ACGCAGTTCGACCG-GTCCGACCTGGAGGCCCGCGGCGACCTGGCCGGCCTGCGGCAGCA 2412
Query 49593 CATCGAGGGCGC 49604
|||||| ||||
Sbjct 2411 GATCGAGCGCGC 2400
>seq117163
Length=525
Score = 206 bits (228), Expect = 1e-48
Identities = 354/504 (70%), Gaps = 21/504 (4%)
Strand=Plus/Plus
Query 49744 TGGCGGGAACAGCTCGGAAGCCTCGGCGGCGGTAACCATTTCATCGAACTATGCCTGGAC 49803
|||| | |||||| || | ||| || || ||||| |||||||| | | | |||||
Sbjct 25 TGGCCGCTACAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCTCCGTGGAC 84
Query 49804 GAAACCGGCCGGGTGTGGCTGTTCCTGCACTCCGGGTCGCGTGGCGTCGGCAACAAGATC 49863
|| | |||||||||| |||||| ||||| ||| || |||||||||||| ||||
Sbjct 85 GAGGAGGACCGGGTGTGGGCGTTCCTCCACTCGGGGAGCCGCGGCGTCGGCAACCGGATC 144
Query 49864 GCCCAAAAGCACATCAAGGTCGCGCAGAAACTCATGGACCGCTGGTGGATTCAGCTCCCA 49923
|| || ||||||| ||||||||||| || ||| |||||||| | |||||
Sbjct 145 GCGCAGGCGCACATCGAGGTCGCGCAGGCCCTGATGACGAAGTGGTGGATCGATCTCCCG 204
Query 49924 AGCCCCGACCTGGCGTACTTGCCGCAAGGCACACCGGAGTTCG-CCG--ACTATCTGCGG 49980
|| |||||| || ||| || | | || || ||||||||| ||| || ||| ||
Sbjct 205 CACCGCGACCTCGCCTACCTGGTGGAGGGGACGGCGGAGTTCGACCGGTAC-ATC-GC-C 261
Query 49981 GAGCTGCACTGGGCGCAGCGGTTCGCGCTAGAGAACCGCGCCGAAATGATGGACCGTTTC 50040
||||||| |||||||||||||||||||| | ||||||| || ||||||||||| ||
Sbjct 262 GAGCTGCGGTGGGCGCAGCGGTTCGCGCTGGTCAACCGCGAGGAGATGATGGACCGCGTC 321
Query 50041 GCTATCGTGTTCGGCGAGTGGATCGGGCACCCCACCGGCGGGGCGCTGGTGGA--AACCA 50098
|| |||| || || ||||| ||||| ||| | ||||| |
Sbjct 322 --------GTCCGGC-AGCTCTCCGAGCACC---TCGGCGAGGCCGTCGTGGAGCAGGAG 369
Query 50099 CGG-TGAACACGCACCACAACTACACGACGCAGGAACGGCACGGCGGCCGCGACGTGTGG 50157
||| | |||||||||||||||| |||| |||||| |||||| |||| | ||| |||
Sbjct 370 CGGATCAACACGCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCAGGACCGTCTGG 429
Query 50158 CTGACCCGCAAGGGCGCCATCGACGCGCACGCCGGCGTGATGGGCCTGATCCCGGGCAGC 50217
| | || |||||||| ||| |||| || |||| | || |||||||| ||
Sbjct 430 GTCTCGCGGAAGGGCGCGATCTCGGCGCGCGAGGGCGAGGCCGGGCTGATCCCCGGATCG 489
Query 50218 ATGGGCACCCCGTCATACGTGGTG 50241
||||||||| | || |||||||||
Sbjct 490 ATGGGCACCGCCTCCTACGTGGTG 513
>seq78026
Length=538
Score = 165 bits (182), Expect = 3e-36
Identities = 277/396 (70%), Gaps = 6/396 (2%)
Strand=Plus/Plus
Query 50110 CACCACAACTACACGACGCAGGAACGGCACGGCGGCCGCGACGTGTGGCTGACCCGCAAG 50169
|||||||||||||| ||||||| |||| |||| ||| ||||| ||||||||
Sbjct 64 CACCACAACTACACCGCGCAGGAGAAGCACTTCGGCAAGACCGTCTGGCTCTCCCGCAAG 123
Query 50170 GGCGCCATCGACGCGCACGCCGGCGTGATGGGCCTGATCCCGGGCAGCATGGGCACCCCG 50229
|| || ||||||||| ||||||| | || |||||||| || ||||| | ||
Sbjct 124 GGGGCGATCGACGCGAGCGCCGGCCGGCCCGGGCTGATCCCCGGGTCGATGGGAGCGGCG 183
Query 50230 TCATACGTGGTGCGCGGCAAGGGCAACCCGGCCGGGCTGTGC-TCGGCGCCGCACGGCGC 50288
|| ||||| || |||| ||||||||||| || |||| | | || |||||||| ||
Sbjct 184 TCGTACGTCGTCGAGGGCAGGGGCAACCCGGTCGCGCTGCACAGCAGC-CCGCACGGGGC 242
Query 50289 CGGCCGCCGGCATTCCCGCACCCAAGCCCGGAAGCTGTTCACCGAGGCCGACCTCGCCGA 50348
|| ||| | | || || || || || |||| |||||| | ||| |||| ||
Sbjct 243 GGGGCGCGAGTACTCGCGGTCCGCGGCGCGCAAGCGCTTCACCCGTGACGATCTCGACGC 302
Query 50349 CCGGATGCAGGGTATCGAGTACCGGCACGG--GGACGCGTGGGTTGACGAAATCCCGGAC 50406
|| ||| || ||||||| || ||| |||||||| | |||||| ||| |||
Sbjct 303 GCGCATGACCGGCATCGAGT--GGGGCCGGTCGGACGCGTTCCTCGACGAACACCCCGAC 360
Query 50407 GCCTACAAGCCAATTCAGACCGTGATGGCCGACGCCGCCGACCTCGTGGAGGTTGTGCAC 50466
|| |||||| || | || ||||||||||| ||||||||||| || ||||
Sbjct 361 GCGTACAAGGACATCGACGTGGTCATGGCCGACGCGGCCGACCTCGTCAGCGTCCGGCAC 420
Query 50467 GAGCTGCGGCAGATTCTCAACGTCAAGGGCAAGTGA 50502
|||||| ||||| |||||||||||||| | |||
Sbjct 421 ACGCTGCGACAGATCGTCAACGTCAAGGGCGACTGA 456
>seq78025
Length=530
Score = 122 bits (134), Expect = 3e-23
Identities = 292/430 (68%), Gaps = 29/430 (7%)
Strand=Plus/Plus
Query 49463 TCATCCCGACTATCGACGCCGTGATCCCGGCCGCGGTGGGCGTGGACATCGGCTGCGGGA 49522
||||||| || | | ||| | |||||||| ||||| ||||| |||||||| |||||||
Sbjct 1 TCATCCCCACGCTGGGCGCGATCATCCCGGCGGCGGTCGGCGTCGACATCGGGTGCGGGA 60
Query 49523 TGATCGCCGCCCGCACCATCTACACCGAGGACGACCTGGACGGCCGG-GACCTCGCCGCG 49581
|||| |||| ||||||| | ||||| || || | | | || | |||| ||| |
Sbjct 61 TGATGGCCGTCCGCACCCCGTTCACCGCCGAGGAGTTCG-CAGCGGTCGACCGCGCGGAA 119
Query 49582 CTGCGGCACGCCATCGAGGGCGCGATCCCGCTGTCGCCGGGCAACTACAACCGCGACACC 49641
|||| ||||||| || | | ||||||||| |||| ||||||| || | |
Sbjct 120 CTGCACGCCGCCATCAGCCGCACCGTGCCGCTGTCGGCGGGTCGCTACAACACCGTCGTC 179
Query 49642 GATCGTTTCCCGTGCACCGCCGGCCGTATCGCCACCCTGACCGACCTCGCCGGCCGCGGC 49701
|| || ||||||| || || ||| || || | ||| | |||| |||
Sbjct 180 GA--------CG-GCACCGC-GGTCG---CGC-ACATCGAG-GCCCTGGA-GGCCAAGGC 223
Query 49702 ACGGACGGCATCCCAGC-GGTTGACCTGTCGCACTCACCGAAGTGGCGGGAACAGCTCGG 49760
| || ||| || ||| || | | ||| ||||||| ||||| ||
Sbjct 224 GGGCGTGG------AGCAGGCCGACG---CGATCGCGCCGG-GTGGCGGCTGCAGCTGGG 273
Query 49761 AAGCCTCGGCGGCGGTAACCATTTCATCGAACTATGCCTGGACGAAACCGGCCGGGTGTG 49820
||||| ||| ||||| |||||||| | |||| ||||| || |||||||||
Sbjct 274 TTCGCTCGGTTCCGGCAACCACTTCATCGAGGTCAGCCTCGACGAGCTCGACCGGGTGTG 333
Query 49821 GCTGTTCCTGCACTCCGGGTCGCGTGGCGTCGGCAACAAGATCGCCCAAAAGCACATCAA 49880
||||||||||||||| || ||||| || || ||||||||| |||| |||||||||
Sbjct 334 GCTGTTCCTGCACTCGGGCTCGCGCGGGGTGGGCAACAAGCTCGCGACCCGGCACATCAA 393
Query 49881 GGTCGCGCAG 49890
||||||||||
Sbjct 394 GGTCGCGCAG 403
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 193452625069900
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