Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023747.1 Length=59672 Score E Sequences producing significant alignments: (Bits) Value seq37323 300 6e-77 seq117163 192 2e-44 seq78026 150 7e-32 seq78025 129 2e-25 seq116094 82.4 3e-11 >seq37323 Length=3330 Score = 300 bits (332), Expect = 6e-77 Identities = 536/766 (70%), Gaps = 35/766 (5%) Strand=Plus/Minus Query 54343 GTGGCGGGAGCAGCTCGGCACGCTGGGCGGTGGTAATCACTTCATCGAGCTGTGCCTGGA 54402 ||||||| ||||||| ||| |||| ||| | || || |||||||||||| | | | | || Sbjct 1901 GTGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCGTCGA 1842 Query 54403 CCACCTCGACCGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTCGGTAACAAGAT 54462 | | ||| |||||| ||||||||||||| || || || || || ||| ||| Sbjct 1841 CGAGACCGATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAACCGGAT 1782 Query 54463 CGCGCAGAAGCACATTCAGGCCGCGCAGGGCTAT-TGCCAGGCGAACG-GGCTGCACGTG 54520 ||| ||| ||||||| ||| |||||||| | | || | ||| | || | || || Sbjct 1781 CGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGAC--GCGGCTGTGGATCCAGCTG 1724 Query 54521 CCGCACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTT 54580 || || || ||||| ||||| || ||||||||| |||||||||||||| ||| Sbjct 1723 CCCGACCGCGACCTGGCCTACCTGGTGGAGGGCACGCCGCAGTTCGACCGCTACATCGCC 1664 Query 54581 GAATTGCGTTGGGCGCAGCGGTTTGCG-TACTACAACCGCGCCGAAATGATGGACCGATT 54639 ||| |||| ||||||||||| || || | || ||||||| || ||||||||||| | Sbjct 1663 GAACTGCGATGGGCGCAGCGCTTCGCCCTGCTG-AACCGCGAGGAGATGATGGACCGCGT 1605 Query 54640 CGAGC---AGGCGTTCAGGCAT-TGGGTCGGGGCCGACCAGG-GCGCCGAGCTGGTCGTC 54694 || || ||| | | ||| | ||| | ||| | |||| |||| |||| | Sbjct 1604 CGTGCGCCAGGTCTCCGAGCACCTCGGT-GCGGCGGTGCAGGAGCGC-GAGCGG------ 1553 Query 54695 GAGACCATCAACGCGCACCACAACTACACGCAGAAGGAGCGGCACGGCGACCGTGACGTG 54754 |||||| |||||||||| ||||||| ||||||||||| || ||||||||| Sbjct 1552 ------ATCAACTGCCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCCGTGACGTC 1499 Query 54755 TGGCTGACCCGTAAGGGTGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGC 54814 |||||| |||| ||||| || ||| | ||| |||| | | |||||||| || || Sbjct 1498 TGGCTGTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGGCGACCTCGGCCTGATCCCCGGG 1439 Query 54815 TCGATGGGCACCTGTTCGTATGTCGTGACCGGCAAGGGCAATCCCGA-GGCGTTGTGCTC 54873 |||||||| ||| || || || ||| || ||| | || || |||| | ||| Sbjct 1438 TCGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGCGA-CCGGATGGCGCTCGACTC 1380 Query 54874 GGCGCCGCATGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACGGT 54933 | ||||||| || || || ||| | | ||||| |||||||||| ||| ||||||| | Sbjct 1379 GTCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGGTCGAAGGCGCGGAAGGCGTTCACGAT 1320 Query 54934 CGACGACCT---CGAAGCGCGTATGACGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGT 54990 ||| | || ||| ||| |||||||||||||||| ||| | |||||| | | Sbjct 1319 CGAGCAGCTGCGCGAGGCG---ATGACGGGCATCGAGTTCCGGGACACCGAGGCCTTCCT 1263 Query 54991 CGACGAGATTCCCGACGCATACAAGCCGATCGACGTCGTGATGCACGACGCCG-AGACGC 55049 |||||||| || | || ||||||||||||||| |||||| |||||| | ||| | Sbjct 1262 GGACGAGATCCCGCAGGCCTACAAGCCGATCGACCAGGTGATGGCCGACGCGGCCGAC-C 1204 Query 55050 TGGTGTCGGTGGATGCCGAGCTGCGGCAGCTCTTGAACGTCAAGGG 55095 |||| | ||| | ||||| ||||| | ||||| ||||| Sbjct 1203 TGGTCACCGTGCGGCACACCCTGCGCCAGCTGGTCAACGTGAAGGG 1158 Score = 116 bits (128), Expect = 1e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 53954 GCGAGCGAGGTCGACGACCAGACTCTCGCGCAGGCGCAGCAGATCGCCGATC-TGCCTTT 54012 || |||| | |||| ||| || |||| ||||||||||| | || ||| | |||| || Sbjct 2668 GCCAGCGTGCTCGAGGACGTCACGCTCGAGCAGGCGCAGCGCA-CGTCGACCATGCCCTT 2610 Query 54013 CGTTTATCCGCATGTGGCGCTGATGCCCGATGCGCATTTCGGTAAGGGCAGCAGTGTCGG 54072 | | | ||||| |||| ||||||||||| ||||| | || ||| || ||||| Sbjct 2609 CATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCCACGGTCGG 2550 Query 54073 CACGGTGATCCCAACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGTTG 54132 | |||||||||| || ||||| ||||| ||||| || || || || || || || || Sbjct 2549 CTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACATCGGCTG 2490 Query 54133 CGGCATGATCGCGGCCCGCAC 54153 ||| |||||||||| |||||| Sbjct 2489 CGGGATGATCGCGGTCCGCAC 2469 >seq117163 Length=525 Score = 192 bits (212), Expect = 2e-44 Identities = 335/483 (69%), Gaps = 27/483 (6%) Strand=Plus/Plus Query 54353 CAGCTCGGCACGCTGGGCGGTGGTAATCACTTCATCGAGCTGTGCCTGGACCACCTCGAC 54412 ||||| ||||| ||||| || || |||||||||||| | | | ||||| | ||| Sbjct 34 CAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCTCCGTGGACGAGGAGGAC 93 Query 54413 CGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTCGGTAACAAGATCGCGCAGAAG 54472 || |||||| |||||| ||||| || || || ||||| ||| |||||||||| | Sbjct 94 CGGGTGTGGGCGTTCCTCCACTCGGGGAGCCGCGGCGTCGGCAACCGGATCGCGCAGGCG 153 Query 54473 CACATTCAGGCCGCGCAGGGCTATTGCCAGGCGAACGGGCTGCACG---TGCCGCACAAG 54529 ||||| ||| |||||||| | || | |||| || | || | |||||| Sbjct 154 CACATCGAGGTCGCGCAGGCC--CTG-ATGACGAAGTGGTGGATCGATCTCCCGCACCGC 210 Query 54530 GATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTTGAATTGCGT 54589 || || || ||||| || ||||| |||| ||||||||||| ||| ||| || |||| Sbjct 211 GACCTCGCCTACCTGGTGGAGGGGACGGCGGAGTTCGACCGGTACATCGCCGAGCTGCGG 270 Query 54590 TGGGCGCAGCGGTTTGCGTACTACAACCGCGCCGAAATGATGGACCGATTCGAGCAGGCG 54649 |||||||||||||| ||| |||||||| || ||||||||||| ||| Sbjct 271 TGGGCGCAGCGGTTCGCGCTGGTCAACCGCGAGGAGATGATGGACCGCGTCG-------- 322 Query 54650 TTCAGGCATTGGGTCGGGGCCGACCAGGGCGCCGAGCTGGTCGTCGA----GACC--ATC 54703 || |||| | || |||| || || |||| ||||| || || | ||| Sbjct 323 -TCCGGCA---GCTC---TCCGAGCACCTCGGCGAGGCCGTCGTGGAGCAGGAGCGGATC 375 Query 54704 AACGCGCACCACAACTACACGCAGAAGGAGCGGCACGGCGACCGTGACGTGTGGCTGACC 54763 ||| |||||||||||| ||||||| ||||||||||| || | | ||| ||| | | Sbjct 376 AACACGCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCAGGACCGTCTGGGTCTCG 435 Query 54764 CGTAAGGGTGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGC 54823 || ||||| |||||| ||| |||||| | | || ||||| || || ||||||||| Sbjct 436 CGGAAGGGCGCGATCTCGGCGCGCGAGGGCGAGGCCGGGCTGATCCCCGGATCGATGGGC 495 Query 54824 ACC 54826 ||| Sbjct 496 ACC 498 >seq78026 Length=538 Score = 150 bits (166), Expect = 7e-32 Identities = 245/350 (70%), Gaps = 2/350 (1%) Strand=Plus/Plus Query 54693 TCGAGACCATCAACGCGCACCACAACTACACGCAGAAGGAGCGGCACGGCGACCGTGACG 54752 ||||| |||||| |||||||||||||| | ||||| |||| || | || Sbjct 47 TCGAGGAGATCAACTGCCACCACAACTACACCGCGCAGGAGAAGCACTTCGGCAAGACCG 106 Query 54753 TGTGGCTGACCCGTAAGGGTGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGG 54812 | ||||| |||| ||||| ||||||||||||| || || || || ||||| || | Sbjct 107 TCTGGCTCTCCCGCAAGGGGGCGATCGACGCGAGCGCCGGCCGGCCCGGGCTGATCCCCG 166 Query 54813 GCTCGATGGGCACCTGTTCGTATGTCGTGACCGGCAAGGGCAATCCCGAGGCGTTGTGC- 54871 | |||||||| | ||||| ||||| |||| |||||| || | ||| || | Sbjct 167 GGTCGATGGGAGCGGCGTCGTACGTCGTCGAGGGCAGGGGCAACCCGGTCGCGCTGCACA 226 Query 54872 TCGGCGCCGCATGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACG 54931 | || ||||| || ||||| ||| || |||||| | ||||||||||| ||||| Sbjct 227 GCAGC-CCGCACGGGGCGGGGCGCGAGTACTCGCGGTCCGCGGCGCGCAAGCGCTTCACC 285 Query 54932 GTCGACGACCTCGAAGCGCGTATGACGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTC 54991 ||||| ||||| ||||| ||||| |||||||||| || | || |||| || Sbjct 286 CGTGACGATCTCGACGCGCGCATGACCGGCATCGAGTGGGGCCGGTCGGACGCGTTCCTC 345 Query 54992 GACGAGATTCCCGACGCATACAAGCCGATCGACGTCGTGATGCACGACGC 55041 ||||| |||||||| |||||| |||||||| || ||| |||||| Sbjct 346 GACGAACACCCCGACGCGTACAAGGACATCGACGTGGTCATGGCCGACGC 395 >seq78025 Length=530 Score = 129 bits (142), Expect = 2e-25 Identities = 196/277 (71%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 54343 GTGGCGGGAGCAGCTCGGCACGCTGGGCGGTGGTAATCACTTCATCGAGCTGTGCCTGGA 54402 ||||||| |||||| || |||| || || || |||||||||||| | |||| || Sbjct 256 GTGGCGGCTGCAGCTGGGTTCGCTCGGTTCCGGCAACCACTTCATCGAGGTCAGCCTCGA 315 Query 54403 CCACCTCGACCGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTCGGTAACAAGAT 54462 | | |||||||| |||||| ||||||||||||| || ||||| || || || |||||| | Sbjct 316 CGAGCTCGACCGGGTGTGGCTGTTCCTGCACTCGGGCTCGCGCGGGGTGGGCAACAAGCT 375 Query 54463 CGCGCAGAAGCACATTCAGGCCGCGCAGGGCTATTG--CCAGGCGAACGGGCTGCACGTG 54520 |||| |||||| ||| |||||||| | || || |||| || | | || Sbjct 376 CGCGACCCGGCACATCAAGGTCGCGCAGGAGCAGTGCACCCGGCG--GTGGATCGCCCTG 433 Query 54521 CCGCACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTT 54580 ||| | ||| || || |||||||||||||| | ||||||| |||||||| Sbjct 434 CCGGATCCGGACCTCGCCTACCTCGTCGAGGGTGAGCGCGAGTTCTGGTCCTACCTCGAG 493 Query 54581 GAATTGCGTTGGGCGCAGCGGTTTGCGTACTACAACC 54617 | |||| ||||||||| ||| || | | ||||| Sbjct 494 GCCCTGCGGTGGGCGCAGGAGTTCGCCTTCCGCAACC 530 >seq116094 Length=536 Score = 82.4 bits (90), Expect = 3e-11 Identities = 140/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 37378 TGGCGGGATAACGCCGTATGCGCGCAGACCGACCCCGAAATCTTCTTTCCAAAGCAGGGC 37437 |||| ||| ||| | ||||| |||||||||||||| ||||| || || ||||| Sbjct 22 TGGCAGGAACTCGCGCTGTGCGCCCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGGC 81 Query 37438 GGCAGCACCCGCGAGGCCAAGCGCATTTGCGGCGGCTGCCAGGTGGCCGACGAGTGCCTC 37497 ||| |||||||||||||||||| | ||| |||| |||| | | |||||||| Sbjct 82 GGCTCGACCCGCGAGGCCAAGCGCGTCTGCCAGTCCTGCGAGGTCCGCCAGGAGTGCCTG 141 Query 37498 GCGTGGGCGCTGAGTCAGCCAGTCAACCCAACGGGCATTTGGGGCGGCACAACCGAACGA 37557 | || |||||| | || | | | | | ||||| |||||||| ||||||| Sbjct 142 GAGTACGCGCTG-GGCAAC--GACGAGCGGTTCGGCATCTGGGGCGGTCTCTCCGAACGC 198 Query 37558 GCACGGCGACGAATCAAGCGC 37578 | ||| || || |||||||| Sbjct 199 GAACGTCGCCGCCTCAAGCGC 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190526075035812