Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_023747.1
Length=59672
Score E
Sequences producing significant alignments: (Bits) Value
seq37323 300 6e-77
seq117163 192 2e-44
seq78026 150 7e-32
seq78025 129 2e-25
seq116094 82.4 3e-11
>seq37323
Length=3330
Score = 300 bits (332), Expect = 6e-77
Identities = 536/766 (70%), Gaps = 35/766 (5%)
Strand=Plus/Minus
Query 54343 GTGGCGGGAGCAGCTCGGCACGCTGGGCGGTGGTAATCACTTCATCGAGCTGTGCCTGGA 54402
||||||| ||||||| ||| |||| ||| | || || |||||||||||| | | | | ||
Sbjct 1901 GTGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCGTCGA 1842
Query 54403 CCACCTCGACCGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTCGGTAACAAGAT 54462
| | ||| |||||| ||||||||||||| || || || || || ||| |||
Sbjct 1841 CGAGACCGATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAACCGGAT 1782
Query 54463 CGCGCAGAAGCACATTCAGGCCGCGCAGGGCTAT-TGCCAGGCGAACG-GGCTGCACGTG 54520
||| ||| ||||||| ||| |||||||| | | || | ||| | || | || ||
Sbjct 1781 CGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGAC--GCGGCTGTGGATCCAGCTG 1724
Query 54521 CCGCACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTT 54580
|| || || ||||| ||||| || ||||||||| |||||||||||||| |||
Sbjct 1723 CCCGACCGCGACCTGGCCTACCTGGTGGAGGGCACGCCGCAGTTCGACCGCTACATCGCC 1664
Query 54581 GAATTGCGTTGGGCGCAGCGGTTTGCG-TACTACAACCGCGCCGAAATGATGGACCGATT 54639
||| |||| ||||||||||| || || | || ||||||| || ||||||||||| |
Sbjct 1663 GAACTGCGATGGGCGCAGCGCTTCGCCCTGCTG-AACCGCGAGGAGATGATGGACCGCGT 1605
Query 54640 CGAGC---AGGCGTTCAGGCAT-TGGGTCGGGGCCGACCAGG-GCGCCGAGCTGGTCGTC 54694
|| || ||| | | ||| | ||| | ||| | |||| |||| |||| |
Sbjct 1604 CGTGCGCCAGGTCTCCGAGCACCTCGGT-GCGGCGGTGCAGGAGCGC-GAGCGG------ 1553
Query 54695 GAGACCATCAACGCGCACCACAACTACACGCAGAAGGAGCGGCACGGCGACCGTGACGTG 54754
|||||| |||||||||| ||||||| ||||||||||| || |||||||||
Sbjct 1552 ------ATCAACTGCCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCCGTGACGTC 1499
Query 54755 TGGCTGACCCGTAAGGGTGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGC 54814
|||||| |||| ||||| || ||| | ||| |||| | | |||||||| || ||
Sbjct 1498 TGGCTGTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGGCGACCTCGGCCTGATCCCCGGG 1439
Query 54815 TCGATGGGCACCTGTTCGTATGTCGTGACCGGCAAGGGCAATCCCGA-GGCGTTGTGCTC 54873
|||||||| ||| || || || ||| || ||| | || || |||| | |||
Sbjct 1438 TCGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGCGA-CCGGATGGCGCTCGACTC 1380
Query 54874 GGCGCCGCATGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACGGT 54933
| ||||||| || || || ||| | | ||||| |||||||||| ||| ||||||| |
Sbjct 1379 GTCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGGTCGAAGGCGCGGAAGGCGTTCACGAT 1320
Query 54934 CGACGACCT---CGAAGCGCGTATGACGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGT 54990
||| | || ||| ||| |||||||||||||||| ||| | |||||| | |
Sbjct 1319 CGAGCAGCTGCGCGAGGCG---ATGACGGGCATCGAGTTCCGGGACACCGAGGCCTTCCT 1263
Query 54991 CGACGAGATTCCCGACGCATACAAGCCGATCGACGTCGTGATGCACGACGCCG-AGACGC 55049
|||||||| || | || ||||||||||||||| |||||| |||||| | ||| |
Sbjct 1262 GGACGAGATCCCGCAGGCCTACAAGCCGATCGACCAGGTGATGGCCGACGCGGCCGAC-C 1204
Query 55050 TGGTGTCGGTGGATGCCGAGCTGCGGCAGCTCTTGAACGTCAAGGG 55095
|||| | ||| | ||||| ||||| | ||||| |||||
Sbjct 1203 TGGTCACCGTGCGGCACACCCTGCGCCAGCTGGTCAACGTGAAGGG 1158
Score = 116 bits (128), Expect = 1e-21
Identities = 148/201 (74%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 53954 GCGAGCGAGGTCGACGACCAGACTCTCGCGCAGGCGCAGCAGATCGCCGATC-TGCCTTT 54012
|| |||| | |||| ||| || |||| ||||||||||| | || ||| | |||| ||
Sbjct 2668 GCCAGCGTGCTCGAGGACGTCACGCTCGAGCAGGCGCAGCGCA-CGTCGACCATGCCCTT 2610
Query 54013 CGTTTATCCGCATGTGGCGCTGATGCCCGATGCGCATTTCGGTAAGGGCAGCAGTGTCGG 54072
| | | ||||| |||| ||||||||||| ||||| | || ||| || |||||
Sbjct 2609 CATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCCACGGTCGG 2550
Query 54073 CACGGTGATCCCAACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGTTG 54132
| |||||||||| || ||||| ||||| ||||| || || || || || || || ||
Sbjct 2549 CTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACATCGGCTG 2490
Query 54133 CGGCATGATCGCGGCCCGCAC 54153
||| |||||||||| ||||||
Sbjct 2489 CGGGATGATCGCGGTCCGCAC 2469
>seq117163
Length=525
Score = 192 bits (212), Expect = 2e-44
Identities = 335/483 (69%), Gaps = 27/483 (6%)
Strand=Plus/Plus
Query 54353 CAGCTCGGCACGCTGGGCGGTGGTAATCACTTCATCGAGCTGTGCCTGGACCACCTCGAC 54412
||||| ||||| ||||| || || |||||||||||| | | | ||||| | |||
Sbjct 34 CAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCTCCGTGGACGAGGAGGAC 93
Query 54413 CGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTCGGTAACAAGATCGCGCAGAAG 54472
|| |||||| |||||| ||||| || || || ||||| ||| |||||||||| |
Sbjct 94 CGGGTGTGGGCGTTCCTCCACTCGGGGAGCCGCGGCGTCGGCAACCGGATCGCGCAGGCG 153
Query 54473 CACATTCAGGCCGCGCAGGGCTATTGCCAGGCGAACGGGCTGCACG---TGCCGCACAAG 54529
||||| ||| |||||||| | || | |||| || | || | ||||||
Sbjct 154 CACATCGAGGTCGCGCAGGCC--CTG-ATGACGAAGTGGTGGATCGATCTCCCGCACCGC 210
Query 54530 GATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTTGAATTGCGT 54589
|| || || ||||| || ||||| |||| ||||||||||| ||| ||| || ||||
Sbjct 211 GACCTCGCCTACCTGGTGGAGGGGACGGCGGAGTTCGACCGGTACATCGCCGAGCTGCGG 270
Query 54590 TGGGCGCAGCGGTTTGCGTACTACAACCGCGCCGAAATGATGGACCGATTCGAGCAGGCG 54649
|||||||||||||| ||| |||||||| || ||||||||||| |||
Sbjct 271 TGGGCGCAGCGGTTCGCGCTGGTCAACCGCGAGGAGATGATGGACCGCGTCG-------- 322
Query 54650 TTCAGGCATTGGGTCGGGGCCGACCAGGGCGCCGAGCTGGTCGTCGA----GACC--ATC 54703
|| |||| | || |||| || || |||| ||||| || || | |||
Sbjct 323 -TCCGGCA---GCTC---TCCGAGCACCTCGGCGAGGCCGTCGTGGAGCAGGAGCGGATC 375
Query 54704 AACGCGCACCACAACTACACGCAGAAGGAGCGGCACGGCGACCGTGACGTGTGGCTGACC 54763
||| |||||||||||| ||||||| ||||||||||| || | | ||| ||| | |
Sbjct 376 AACACGCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCAGGACCGTCTGGGTCTCG 435
Query 54764 CGTAAGGGTGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGC 54823
|| ||||| |||||| ||| |||||| | | || ||||| || || |||||||||
Sbjct 436 CGGAAGGGCGCGATCTCGGCGCGCGAGGGCGAGGCCGGGCTGATCCCCGGATCGATGGGC 495
Query 54824 ACC 54826
|||
Sbjct 496 ACC 498
>seq78026
Length=538
Score = 150 bits (166), Expect = 7e-32
Identities = 245/350 (70%), Gaps = 2/350 (1%)
Strand=Plus/Plus
Query 54693 TCGAGACCATCAACGCGCACCACAACTACACGCAGAAGGAGCGGCACGGCGACCGTGACG 54752
||||| |||||| |||||||||||||| | ||||| |||| || | ||
Sbjct 47 TCGAGGAGATCAACTGCCACCACAACTACACCGCGCAGGAGAAGCACTTCGGCAAGACCG 106
Query 54753 TGTGGCTGACCCGTAAGGGTGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGG 54812
| ||||| |||| ||||| ||||||||||||| || || || || ||||| || |
Sbjct 107 TCTGGCTCTCCCGCAAGGGGGCGATCGACGCGAGCGCCGGCCGGCCCGGGCTGATCCCCG 166
Query 54813 GCTCGATGGGCACCTGTTCGTATGTCGTGACCGGCAAGGGCAATCCCGAGGCGTTGTGC- 54871
| |||||||| | ||||| ||||| |||| |||||| || | ||| || |
Sbjct 167 GGTCGATGGGAGCGGCGTCGTACGTCGTCGAGGGCAGGGGCAACCCGGTCGCGCTGCACA 226
Query 54872 TCGGCGCCGCATGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACG 54931
| || ||||| || ||||| ||| || |||||| | ||||||||||| |||||
Sbjct 227 GCAGC-CCGCACGGGGCGGGGCGCGAGTACTCGCGGTCCGCGGCGCGCAAGCGCTTCACC 285
Query 54932 GTCGACGACCTCGAAGCGCGTATGACGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTC 54991
||||| ||||| ||||| ||||| |||||||||| || | || |||| ||
Sbjct 286 CGTGACGATCTCGACGCGCGCATGACCGGCATCGAGTGGGGCCGGTCGGACGCGTTCCTC 345
Query 54992 GACGAGATTCCCGACGCATACAAGCCGATCGACGTCGTGATGCACGACGC 55041
||||| |||||||| |||||| |||||||| || ||| ||||||
Sbjct 346 GACGAACACCCCGACGCGTACAAGGACATCGACGTGGTCATGGCCGACGC 395
>seq78025
Length=530
Score = 129 bits (142), Expect = 2e-25
Identities = 196/277 (71%), Gaps = 4/277 (1%)
Strand=Plus/Plus
Query 54343 GTGGCGGGAGCAGCTCGGCACGCTGGGCGGTGGTAATCACTTCATCGAGCTGTGCCTGGA 54402
||||||| |||||| || |||| || || || |||||||||||| | |||| ||
Sbjct 256 GTGGCGGCTGCAGCTGGGTTCGCTCGGTTCCGGCAACCACTTCATCGAGGTCAGCCTCGA 315
Query 54403 CCACCTCGACCGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTCGGTAACAAGAT 54462
| | |||||||| |||||| ||||||||||||| || ||||| || || || |||||| |
Sbjct 316 CGAGCTCGACCGGGTGTGGCTGTTCCTGCACTCGGGCTCGCGCGGGGTGGGCAACAAGCT 375
Query 54463 CGCGCAGAAGCACATTCAGGCCGCGCAGGGCTATTG--CCAGGCGAACGGGCTGCACGTG 54520
|||| |||||| ||| |||||||| | || || |||| || | | ||
Sbjct 376 CGCGACCCGGCACATCAAGGTCGCGCAGGAGCAGTGCACCCGGCG--GTGGATCGCCCTG 433
Query 54521 CCGCACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTT 54580
||| | ||| || || |||||||||||||| | ||||||| ||||||||
Sbjct 434 CCGGATCCGGACCTCGCCTACCTCGTCGAGGGTGAGCGCGAGTTCTGGTCCTACCTCGAG 493
Query 54581 GAATTGCGTTGGGCGCAGCGGTTTGCGTACTACAACC 54617
| |||| ||||||||| ||| || | | |||||
Sbjct 494 GCCCTGCGGTGGGCGCAGGAGTTCGCCTTCCGCAACC 530
>seq116094
Length=536
Score = 82.4 bits (90), Expect = 3e-11
Identities = 140/201 (70%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 37378 TGGCGGGATAACGCCGTATGCGCGCAGACCGACCCCGAAATCTTCTTTCCAAAGCAGGGC 37437
|||| ||| ||| | ||||| |||||||||||||| ||||| || || |||||
Sbjct 22 TGGCAGGAACTCGCGCTGTGCGCCCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGGC 81
Query 37438 GGCAGCACCCGCGAGGCCAAGCGCATTTGCGGCGGCTGCCAGGTGGCCGACGAGTGCCTC 37497
||| |||||||||||||||||| | ||| |||| |||| | | ||||||||
Sbjct 82 GGCTCGACCCGCGAGGCCAAGCGCGTCTGCCAGTCCTGCGAGGTCCGCCAGGAGTGCCTG 141
Query 37498 GCGTGGGCGCTGAGTCAGCCAGTCAACCCAACGGGCATTTGGGGCGGCACAACCGAACGA 37557
| || |||||| | || | | | | | ||||| |||||||| |||||||
Sbjct 142 GAGTACGCGCTG-GGCAAC--GACGAGCGGTTCGGCATCTGGGGCGGTCTCTCCGAACGC 198
Query 37558 GCACGGCGACGAATCAAGCGC 37578
| ||| || || ||||||||
Sbjct 199 GAACGTCGCCGCCTCAAGCGC 219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 190526075035812
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |