Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_024135.1
Length=42392
Score E
Sequences producing significant alignments: (Bits) Value
seq116094 120 8e-23
seq78850 105 2e-18
>seq116094
Length=536
Score = 120 bits (132), Expect = 8e-23
Identities = 133/175 (76%), Gaps = 2/175 (1%)
Strand=Plus/Plus
Query 31503 GCGCTGTGCCCGCAAACGGATCCCGACGTGTTCTTCCCCGAAAAGGGCGGCAGCACCAAA 31562
||||||||| | || || || ||||| | |||||||||||| ||||||||| |||
Sbjct 34 GCGCTGTGCGCCCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGGCGGCTCGACCCGC 93
Query 31563 GAAGCGAAA-GCGATCTGTGGGCTGTGCGATGTCCGCAACGAATGCCTGGAGTACGCGTT 31621
|| || || ||| |||| | ||||| |||||| | || ||||||||||||||| |
Sbjct 94 GAGGCCAAGCGCG-TCTGCCAGTCCTGCGAGGTCCGCCAGGAGTGCCTGGAGTACGCGCT 152
Query 31622 GGCGCACGACGAACGATTCGGCATCTGGGGCGGCTTATCCGAGCGTGACCGGCGC 31676
|| ||||||| || ||||||||||||||||| | ||||| || || || |||
Sbjct 153 GGGCAACGACGAGCGGTTCGGCATCTGGGGCGGTCTCTCCGAACGCGAACGTCGC 207
>seq78850
Length=1053
Score = 105 bits (116), Expect = 2e-18
Identities = 130/175 (74%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 31504 CGCTGTGCCCGCAAACGGATCCCGACGTGTTCTTCCCCGAAAAGGGCGGCAGCACCAAAG 31563
|||||||| |||| || ||||| || | ||||||||| |||||||| || || |
Sbjct 549 CGCTGTGCGCGCAGACCGATCCTGAGGCGTTCTTCCCGGAAAAGGGTGGATCGACGCGCG 608
Query 31564 AAGCGAAAGCGATCTGTGGGCTGTGCGATGTCCGCAA--CGAA-TGCCTGGAGTACGCGT 31620
| ||||| |||||| | |||||| ||| || || | ||||| |||||||||
Sbjct 609 AGGCGAAGCGGATCTGCACGTCGTGCGAGGTC---AAGTCGCAGTGCCTCGAGTACGCGC 665
Query 31621 TGGCGCACGACGAACGATTCGGCATCTGGGGCGGCTTATCCGAGCGTGACCGGCG 31675
|| | ||||||| || |||||||||||||||||| | |||||||| || || ||
Sbjct 666 TGCAGAACGACGAGCGCTTCGGCATCTGGGGCGGCCTCTCCGAGCGCGAGCGCCG 720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 135317794916772
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |