Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_024135.1 Length=42392 Score E Sequences producing significant alignments: (Bits) Value seq116094 120 8e-23 seq78850 105 2e-18 >seq116094 Length=536 Score = 120 bits (132), Expect = 8e-23 Identities = 133/175 (76%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 31503 GCGCTGTGCCCGCAAACGGATCCCGACGTGTTCTTCCCCGAAAAGGGCGGCAGCACCAAA 31562 ||||||||| | || || || ||||| | |||||||||||| ||||||||| ||| Sbjct 34 GCGCTGTGCGCCCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGGCGGCTCGACCCGC 93 Query 31563 GAAGCGAAA-GCGATCTGTGGGCTGTGCGATGTCCGCAACGAATGCCTGGAGTACGCGTT 31621 || || || ||| |||| | ||||| |||||| | || ||||||||||||||| | Sbjct 94 GAGGCCAAGCGCG-TCTGCCAGTCCTGCGAGGTCCGCCAGGAGTGCCTGGAGTACGCGCT 152 Query 31622 GGCGCACGACGAACGATTCGGCATCTGGGGCGGCTTATCCGAGCGTGACCGGCGC 31676 || ||||||| || ||||||||||||||||| | ||||| || || || ||| Sbjct 153 GGGCAACGACGAGCGGTTCGGCATCTGGGGCGGTCTCTCCGAACGCGAACGTCGC 207 >seq78850 Length=1053 Score = 105 bits (116), Expect = 2e-18 Identities = 130/175 (74%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 31504 CGCTGTGCCCGCAAACGGATCCCGACGTGTTCTTCCCCGAAAAGGGCGGCAGCACCAAAG 31563 |||||||| |||| || ||||| || | ||||||||| |||||||| || || | Sbjct 549 CGCTGTGCGCGCAGACCGATCCTGAGGCGTTCTTCCCGGAAAAGGGTGGATCGACGCGCG 608 Query 31564 AAGCGAAAGCGATCTGTGGGCTGTGCGATGTCCGCAA--CGAA-TGCCTGGAGTACGCGT 31620 | ||||| |||||| | |||||| ||| || || | ||||| ||||||||| Sbjct 609 AGGCGAAGCGGATCTGCACGTCGTGCGAGGTC---AAGTCGCAGTGCCTCGAGTACGCGC 665 Query 31621 TGGCGCACGACGAACGATTCGGCATCTGGGGCGGCTTATCCGAGCGTGACCGGCG 31675 || | ||||||| || |||||||||||||||||| | |||||||| || || || Sbjct 666 TGCAGAACGACGAGCGCTTCGGCATCTGGGGCGGCCTCTCCGAGCGCGAGCGCCG 720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135317794916772