Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_024143.1
Length=53255
Score E
Sequences producing significant alignments: (Bits) Value
seq81249 154 5e-33
>seq81249
Length=1001
Score = 154 bits (170), Expect = 5e-33
Identities = 208/283 (73%), Gaps = 14/283 (5%)
Strand=Plus/Plus
Query 41067 GTAGAGCCACGCGATCGAGTCGCGGATCTCGAAGCCCGCGTCCTCGATGGCCACGGTCAG 41126
||||||||||||||||||||||||||||||||| || ||||||||||| | | | ||
Sbjct 1 GTAGAGCCACGCGATCGAGTCGCGGATCTCGAATCCGGCGTCCTCGATTCCGGCAGCGAG 60
Query 41127 CCGGTGCCAGGTGCGGGAGCCGCCGAAGGCGAGCAGGTGCCCACCGGGCTTGAGGACCCG 41186
||||| ||||||| | |||||||||||||| || ||||| ||||| ||||||| ||
Sbjct 61 GCGGTGGAAGGTGCGAGTACCGCCGAAGGCGAGGAGCTGCCCGCCGGGTTTGAGGATGCG 120
Query 41187 CAGGCATT--GC-TCCCACATCTCG-AC-----GTCGAAAGCGATGCCCGAGTTG---TC 41234
||||| | || ||||| |||| || | ||| || | | || | ||
Sbjct 121 GAGGCACTCGGCGGCCCACTGCTCGCACCAGTGCTGGAACTCGCCGGGGGTGTAGCGATC 180
Query 41235 CCACTTCTTGCCCATGAAGGCCAGTTCGTAGGGCGGGTCGGTGACGATGGAGTCGACGCT 41294
||| | |||||||||| | || |||||||||| |||||||||| || || |||||
Sbjct 181 CCAGCCGTGGCCCATGAAGTCGAGGGCGTAGGGCGGATCGGTGACGACGGCGTGCACGCT 240
Query 41295 GGCGTCTTCTAG-TTCGGTGAGGATGTCTCGGCAGTCTCCGAG 41336
| |||| || ||| | ||||| ||| ||||||| |||||
Sbjct 241 GCCGTCGGGCAGCTTCCG-GAGGACGTCGAGGCAGTCGCCGAG 282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 170024250179106
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |