Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_024143.1 Length=53255 Score E Sequences producing significant alignments: (Bits) Value seq81249 154 5e-33 >seq81249 Length=1001 Score = 154 bits (170), Expect = 5e-33 Identities = 208/283 (73%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 41067 GTAGAGCCACGCGATCGAGTCGCGGATCTCGAAGCCCGCGTCCTCGATGGCCACGGTCAG 41126 ||||||||||||||||||||||||||||||||| || ||||||||||| | | | || Sbjct 1 GTAGAGCCACGCGATCGAGTCGCGGATCTCGAATCCGGCGTCCTCGATTCCGGCAGCGAG 60 Query 41127 CCGGTGCCAGGTGCGGGAGCCGCCGAAGGCGAGCAGGTGCCCACCGGGCTTGAGGACCCG 41186 ||||| ||||||| | |||||||||||||| || ||||| ||||| ||||||| || Sbjct 61 GCGGTGGAAGGTGCGAGTACCGCCGAAGGCGAGGAGCTGCCCGCCGGGTTTGAGGATGCG 120 Query 41187 CAGGCATT--GC-TCCCACATCTCG-AC-----GTCGAAAGCGATGCCCGAGTTG---TC 41234 ||||| | || ||||| |||| || | ||| || | | || | || Sbjct 121 GAGGCACTCGGCGGCCCACTGCTCGCACCAGTGCTGGAACTCGCCGGGGGTGTAGCGATC 180 Query 41235 CCACTTCTTGCCCATGAAGGCCAGTTCGTAGGGCGGGTCGGTGACGATGGAGTCGACGCT 41294 ||| | |||||||||| | || |||||||||| |||||||||| || || ||||| Sbjct 181 CCAGCCGTGGCCCATGAAGTCGAGGGCGTAGGGCGGATCGGTGACGACGGCGTGCACGCT 240 Query 41295 GGCGTCTTCTAG-TTCGGTGAGGATGTCTCGGCAGTCTCCGAG 41336 | |||| || ||| | ||||| ||| ||||||| ||||| Sbjct 241 GCCGTCGGGCAGCTTCCG-GAGGACGTCGAGGCAGTCGCCGAG 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170024250179106