Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq107491 87.8 2e-12 seq83720 84.2 2e-11 >seq107491 Length=627 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 146725 CGGTGTATAGCGCAGCCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGCTGGTTCGAT 146784 ||| || |||||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 16 CGGGGTGTAGCGCAGTCTGGTAGCGCATCTGGTTTGGGACCAGAGGGTCGTAGGTTCGAA 75 Query 146785 TCC 146787 ||| Sbjct 76 TCC 78 >seq83720 Length=955 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 144252 GCTGGATTAGCTCAGTAGGTAGAGCGCCTCACTTGTAATGAGGATGTCGCGGGTTCGATT 144311 || || |||||||||| |||||||| || | ||||||| || | ||||||||||||||| Sbjct 545 GCCGGTTTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGTAGGTCGCGGGTTCGATT 604 Query 144312 CCTGCATCCAGCACCA 144327 |||||| || |||||| Sbjct 605 CCTGCAACCGGCACCA 620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476393557645680