Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_024366.1 Length=62661 Score E Sequences producing significant alignments: (Bits) Value seq37323 237 6e-58 seq117163 159 1e-34 seq78025 145 3e-30 seq78026 141 4e-29 seq103996 98.7 4e-16 seq37623 98.7 4e-16 seq105772 93.3 2e-14 seq63746 86.0 3e-12 >seq37323 Length=3330 Score = 237 bits (262), Expect = 6e-58 Identities = 504/737 (68%), Gaps = 43/737 (6%) Strand=Plus/Minus Query 53816 GTGGCGCGAACAACTCGGCACACTCGGCGGCGGCAACCACTTCATCGAACTGTGCGTCGA 53875 |||||| | || || ||| | |||||| ||||||||||||||||||| | | |||||| Sbjct 1901 GTGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCGTCGA 1842 Query 53876 CCAGCACGGCCGGCTGTGGCTGTTCCTGCATTCCGGTTCACGCGGTGTCGGCAACAAGAT 53935 | || || | |||||||||||||||| || || || || || |||||| ||| Sbjct 1841 CGAGACCGATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAACCGGAT 1782 Query 53936 CGCCCAGAAGCACATCAAGATCGCGCAAGCCGA-ATGCGCCGAGCATGGTGTCGAACTGC 53994 ||||||| ||||||||||| ||||||| ||||| ||| || || | || | |||| Sbjct 1781 CGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCG-GCTGTGGATCCAGCTGC 1723 Query 53995 CCGGCGGCAACAAGGATCTAGCCTACCTCGTCGAGGGCGAACCGTCGTTCGGCGCGTACC 54054 ||| | || || || |||||||| || |||||| ||| ||||| | ||| Sbjct 1722 CCGACCGC------GACCTGGCCTACCTGGTGGAGGGCACGCCGCAGTTCGACCGCTACA 1669 Query 54055 TCGCTGAGCTGCGTTGGGCGCAACAGTTCGCGATGTTCAACCGCAACGAGATGATGGACC 54114 |||| || ||||| |||||||| | ||||| || | |||||| | ||||||||||||| Sbjct 1668 TCGCCGAACTGCGATGGGCGCAGCGCTTCGCCCTGCTGAACCGCGAGGAGATGATGGACC 1609 Query 54115 GGTACCGGCAAGCGTTCGCGCACTG-GCTCGACATCGGTGTCGACGAGGCGCCAGTCGTC 54173 | || | ||| | | | | || || |||||| || || | ||| Sbjct 1608 G----CGTCGTGCGCCAGGTCTCCGAGC---ACCTCGGTG-CGGCGGTG---CAG----- 1565 Query 54174 GAGATCGCCGGCGAACGCGTCAACGCGCACCACAACTACACCACCCAGGA---GCACATC 54230 ||| |||| || ||||| |||||||||| ||| ||||| |||| || Sbjct 1564 GAG------CGCGAGCGGATCAACTGCCACCACAACTTCACGCAGCAGGAGCGGCACTTC 1511 Query 54231 AACGGTGAGCTGGTGTGGGTGACCCGCAAGGGCGCCATCAGCGCGCAACTCGGTGAGCGT 54290 | |||| || ||| || ||||||||||||||||| |||| | || || | Sbjct 1510 GGCCGTGA---CGTCTGGCTGTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGGCGACCTC 1454 Query 54291 GGCCTCATCCCCGGCAGCATGGGCACGGCCTCCTACGTCGTCACCGGTAAAGGCAACCCC 54350 ||||| |||||||| ||||| || ||||||||||| || || ||| | || Sbjct 1453 GGCCTGATCCCCGGGTCGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGCGA-CCG 1395 Query 54351 GAAGG-GCTGCATTCCGCGCCGCACGGCGCCGGCCGC-CGCTACTCCCGCACCAAGGCAC 54408 || || ||| | || |||||||||||||||| ||| ||| || || | ||||| | Sbjct 1394 GATGGCGCTCGACTCGTCGCCGCACGGCGCCGGGCGCGTGCT-GTCGCGGTCGAAGGCGC 1336 Query 54409 GCAAGCTGTTCACCGTCGACGACCT-CGCAGACCGTATGCGCGGCATCGAATACCGGCAC 54467 | ||| |||||| |||| | || ||| || ||| |||||||| | |||| || Sbjct 1335 GGAAGGCGTTCACGATCGAGCAGCTGCGC-GAGGCGATGACGGGCATCGAGTTCCGGGAC 1277 Query 54468 GGTGAGGCGTGGGTCGACGAGATTCCCGACGCCTACAAGCCGATTGACGTTGTCATGCAC 54527 ||||| | | |||||||| || | |||||||||||||| ||| || ||| | Sbjct 1276 ACCGAGGCCTTCCTGGACGAGATCCCGCAGGCCTACAAGCCGATCGACCAGGTGATGGCC 1217 Query 54528 GACGCCGAAGACCTCGT 54544 ||||| | ||||| || Sbjct 1216 GACGCGGCCGACCTGGT 1200 >seq117163 Length=525 Score = 159 bits (176), Expect = 1e-34 Identities = 357/517 (69%), Gaps = 47/517 (9%) Strand=Plus/Plus Query 53825 ACAACTCGGCACACTCGGCGGCGGCAACCACTTCATCGAACTGTGCGTCGACCAGCACGG 53884 ||| || ||||| || || ||||||||||||||||| | | ||| ||| || | | Sbjct 33 ACAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCTCCGTGGACGAGGAGGA 92 Query 53885 CCGGCTGTGGCTGTTCCTGCATTCCGGTTCACGCGGTGTCGGCAACAAGATCGCCCAGAA 53944 |||| ||||| |||||| || || || ||||| ||||||||| |||||| ||| Sbjct 93 CCGGGTGTGGGCGTTCCTCCACTCGGGGAGCCGCGGCGTCGGCAACCGGATCGCGCAGGC 152 Query 53945 GCACATCAAGATCGCGCAAGCCGAATG-CGCCGAGCATGGTG--TCGAACTGCCCGGCGG 54001 ||||||| || ||||||| ||| || | ||| ||||| |||| || |||| Sbjct 153 GCACATCGAGGTCGCGCAGGCC--CTGATGACGA-AGTGGTGGATCGATCT-CCCG---- 204 Query 54002 CAACAAGGATCTAGCCTACCTCGTCGAGGGCGAACCGTCGTTCGGCGCGTACCTCGCTGA 54061 || || || |||||||| || ||||| || ||||| | |||| |||| || Sbjct 205 -CACCGCGACCTCGCCTACCTGGTGGAGGGGACGGCGGAGTTCGACCGGTACATCGCCGA 263 Query 54062 GCTGCGTTGGGCGCAACAGTTCGCGATGTTCAACCGCAACGAGATGATGGACCGGTACCG 54121 |||||| |||||||| | ||||||| || |||||||| | |||||||||||||| || Sbjct 264 GCTGCGGTGGGCGCAGCGGTTCGCGCTGGTCAACCGCGAGGAGATGATGGACCG----CG 319 Query 54122 GCAAGCGTTCGCGCA-CTGGCTCGA-CATCGGTGTCGACGAGGCGCCAGTCGTCGAGATC 54179 ||| || ||| || | ||| || | ||| ||||| | ||||| || Sbjct 320 ----TCGTCCG-GCAGCTCTC-CGAGCACC----TCGGCGAGG---CCGTCGTGGA---- 362 Query 54180 GCCGGCGAACGCGTCAACGCGCACCACAACTACACCACCCAGGA---GCACATCAACGGT 54236 || | || || ||||| |||||||||||| ||| ||||| |||| || | | Sbjct 363 GCAG--GAGCGGATCAACACGCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCAG- 419 Query 54237 GAGCTGGTGTGGGTGACCCGCAAGGGCGCCA--TCAGCGCGCAACTCGGTGAGCGTGGCC 54294 || | || ||||| | || |||||||| | || |||||| | || ||| || | Sbjct 420 GACC--GTCTGGGTCTCGCGGAAGGGCGCGATCTCGGCGCGCGA--GGGCGAGGCCGGGC 475 Query 54295 TCATCCCCGGCAGCATGGGCACGGCCTCCTACGTCGT 54331 | |||||||| |||||||| ||||||||||| || Sbjct 476 TGATCCCCGGATCGATGGGCACCGCCTCCTACGTGGT 512 >seq78025 Length=530 Score = 145 bits (160), Expect = 3e-30 Identities = 186/250 (74%), Gaps = 10/250 (4%) Strand=Plus/Plus Query 53838 CTCGGCGGCGGCAACCACTTCATCGAACTGTGCGTCGACCAGCACGGCCGGCTGTGGCTG 53897 ||||| |||||||||||||||||| | || ||||| ||| || |||| |||||||| Sbjct 278 CTCGGTTCCGGCAACCACTTCATCGAGGTCAGCCTCGACGAGCTCGACCGGGTGTGGCTG 337 Query 53898 TTCCTGCATTCCGGTTCACGCGGTGTCGGCAACAAGATCGC--CCAGAAGCACATCAAGA 53955 |||||||| || || || ||||| || ||||||||| |||| || | |||||||||| Sbjct 338 TTCCTGCACTCGGGCTCGCGCGGGGTGGGCAACAAGCTCGCGACCCG--GCACATCAAGG 395 Query 53956 TCGCGCAAGCCGAATGCGCCGAGCATGGTGTCGAACTGCCCGGCGGCAACAAGGATCTAG 54015 ||||||| | | ||| || || |||| || | |||| || | | | ||| || | Sbjct 396 TCGCGCAGGAGCAGTGCACCCGGC--GGTG--GATC-GCCCTGCCGGATC-CGGACCTCG 449 Query 54016 CCTACCTCGTCGAGGGCGAACCGTCGTTCGGCGCGTACCTCGCTGAGCTGCGTTGGGCGC 54075 |||||||||||||||| || | |||| | | ||||||| | ||||| ||||||| Sbjct 450 CCTACCTCGTCGAGGGTGAGCGCGAGTTCTGGTCCTACCTCGAGGCCCTGCGGTGGGCGC 509 Query 54076 AACAGTTCGC 54085 | ||||||| Sbjct 510 AGGAGTTCGC 519 >seq78026 Length=538 Score = 141 bits (156), Expect = 4e-29 Identities = 270/396 (68%), Gaps = 4/396 (1%) Strand=Plus/Plus Query 54193 TCAACGCGCACCACAACTACACCACCCAGGAGCACATCAACGGTGAGCTGGTGTGGGTGA 54252 ||||| ||||||||||||||| | |||||| | | ||| || || ||| | Sbjct 56 TCAACTGCCACCACAACTACACCGCGCAGGAGAAGCACTTCGGCAAGACCGTCTGGCTCT 115 Query 54253 CCCGCAAGGGCGCCATCAGCGCGCAACTCGGTGAGCGTGGCCTCATCCCCGGCAGCATGG 54312 |||||||||| || ||| |||| ||| || || || |||||||| |||| Sbjct 116 CCCGCAAGGGGGCGATCGACGCGAGCGCCGGCCGGCCCGGGCTGATCCCCGGGTCGATGG 175 Query 54313 GCACGGCCTCCTACGTCGTCACCGGTAAAGGCAACCCCGAAGGGCTGCATTCCGCGCCGC 54372 | |||| || ||||||||| || | |||||||| | | |||||| | |||| Sbjct 176 GAGCGGCGTCGTACGTCGTCGAGGGCAGGGGCAACCCGGTCGCGCTGCACAGCAGCCCGC 235 Query 54373 ACGGCGCCGGCCGCCGCTACTCCCGCACCAAGGCACGCAAGCTGTTCACCGTCGACGACC 54432 |||| || || ||| ||||| || || ||| ||||||| |||||| ||||| | Sbjct 236 ACGGGGCGGGGCGCGAGTACTCGCGGTCCGCGGCGCGCAAGCGCTTCACCCGTGACGATC 295 Query 54433 TCGCAGACCGTATGCGCGGCATCGAATACCGGCACGGT--GAGGCGTGGGTCGACGAGAT 54490 ||| | || ||| ||||||||| | || |||| || |||| ||||||| Sbjct 296 TCGACGCGCGCATGACCGGCATCGAGT--GGGGCCGGTCGGACGCGTTCCTCGACGAACA 353 Query 54491 TCCCGACGCCTACAAGCCGATTGACGTTGTCATGCACGACGCCGAAGACCTCGTGTCGGT 54550 |||||||| |||||| || ||||| |||||| |||||| | |||||||| || Sbjct 354 CCCCGACGCGTACAAGGACATCGACGTGGTCATGGCCGACGCGGCCGACCTCGTCAGCGT 413 Query 54551 TGACGTCGAGCTGCGTCAAATCGTCAACGTCAAGGG 54586 | |||||| || ||||||||||||||||| Sbjct 414 CCGGCACACGCTGCGACAGATCGTCAACGTCAAGGG 449 >seq103996 Length=666 Score = 98.7 bits (108), Expect = 4e-16 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 827 GGTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 885 ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 457 GGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 399 >seq37623 Length=2350 Score = 98.7 bits (108), Expect = 4e-16 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 827 GGTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 885 ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1362 GGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 1304 >seq105772 Length=647 Score = 93.3 bits (102), Expect = 2e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 827 GGTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 885 ||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 557 GGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 499 >seq63746 Length=1499 Score = 86.0 bits (94), Expect = 3e-12 Identities = 133/187 (71%), Gaps = 5/187 (3%) Strand=Plus/Minus Query 48041 GACCGGCGCGAAAGACCGCGGCGACATCGGCGGTGTGCGGCT---GCACGGCCAGCGTGT 48097 || ||| || || ||| | |||||| |||| || |||||| || |||| || || Sbjct 739 GAACGGGGCAAAGGACAGGGGCGACGTCGGGGGAGTGCGGACCGCGCTCGGCGGCCGCGT 680 Query 48098 CGTGATCGAGTGCAAGAACGTCGCCACCATGTCGCTGCCACAGTGGA-CACGCGAGGCGC 48156 ||| |||||| ||||||||| |||| ||| || |||| || | |||||| Sbjct 679 CGTCATCGAGGTGAAGAACGTCACCACGATGAACCTCAGCGGGTGGGTCAAG-GAGGCGG 621 Query 48157 ACATCGAAGCCGGCAACGACGACGCGCTGGTTGGTGTCGTGGTGCACAAACGGCACGGCA 48216 | |||| ||||||||||||||| |||||| ||||| |||||||| |||| |||| Sbjct 620 AAGTCGAGCGCGGCAACGACGACGCTGCGGTTGGCGTCGTCGTGCACAAGCGGCGGGGCA 561 Query 48217 CCGGCGA 48223 ||||| Sbjct 560 AGGGCGA 554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200064141196038