Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq10933 111 4e-19 seq12261 107 5e-18 seq588 87.8 4e-12 >seq10933 Length=18736 Score = 111 bits (122), Expect = 4e-19 Identities = 172/241 (71%), Gaps = 16/241 (7%) Strand=Plus/Minus Query 304908 TAATGGATAATGAAATTGCTGGAATTATGCAGGCATCTCAAAGATCTGGCAGACCT-TTA 304966 || ||| ||||| | || || || || |||||| | || ||||| || |||||| ||| Sbjct 15819 TATTGGCTAATGCATTTCCT--AACCATACAGGCAACCCAGAGATCAGGGAGACCTATTA 15762 Query 304967 AAGG-----GTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAA 305021 || ||| ||||| |||||| || || ||||| || ||||||| | | Sbjct 15761 AATCTATCTGTAGTAGGC------TTAAAGCAAAGGAAGGTCGAATCAGAGGTAACTTGA 15708 Query 305022 TGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCTCAAATTAGTC 305081 |||| |||||||| |||||| ||| ||| ||| || || |||||| | | |||| | Sbjct 15707 TGGGGAAACGTGTGGATTTTTCAGCACGAACTGTTATTACCCCTGATCCAAACATTAATA 15648 Query 305082 TTCATGAATTAGGAGTTCCAATTGAA-ATTGCTTTAAAACTAACATTTCCAGAGAAAGTT 305140 || ||||||| || || ||| | || ||||||||||| || |||| |||||||| ||| Sbjct 15647 TTGATGAATTGGGGGTCCCA-TGGAGTATTGCTTTAAATCTCACATATCCAGAGACTGTT 15589 Query 305141 A 305141 | Sbjct 15588 A 15588 Score = 98.7 bits (108), Expect = 2e-15 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||||||| |||| ||||| || ||| | ||||| || |||||||||||| Sbjct 15218 CATTTGAATGATGGAGATTTTGTTCTCTTTAATCGTCAACCTAGTCTCCATAAAATGTCT 15159 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAGTG 305426 || |||| |||| | |||| ||||| | | || ||||| | ||| | || Sbjct 15158 ATTATGGGGCATAGAATCAAG--ATTATGCCATACTCAACTTTTCGTCTGAATTTGTCTG 15101 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | | || || ||||| ||||||||||| |||||||||||||||||||| ||||||| Sbjct 15100 TTACCTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCAAT 15041 Query 305487 CA 305488 || Sbjct 15040 CA 15039 >seq12261 Length=16166 Score = 107 bits (118), Expect = 5e-18 Identities = 171/241 (71%), Gaps = 16/241 (7%) Strand=Plus/Minus Query 304908 TAATGGATAATGAAATTGCTGGAATTATGCAGGCATCTCAAAGATCTGGCAGACCT-TTA 304966 || |||||||||| || || || || |||||| | || ||||| | ||||| ||| Sbjct 3386 TATTGGATAATGATTTTCCT--AACCATACAGGCAACCCAGAGATCAAGGGGACCTATTA 3329 Query 304967 AAGG-----GTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAA 305021 || ||| ||||| |||||| || || ||||| || ||||||| | | Sbjct 3328 AATCTATCTGTAGTAGGC------TTAAAGCAAAGGAAGGTCGAATCAGAGGTAACTTGA 3275 Query 305022 TGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCTCAAATTAGTC 305081 |||| |||||||| |||||| ||| ||| ||| || || |||||| | | |||| | Sbjct 3274 TGGGGAAACGTGTGGATTTTTCAGCACGAACTGTTATTACCCCTGATCCAAACATTAATA 3215 Query 305082 TTCATGAATTAGGAGTTCCAATTGAA-ATTGCTTTAAAACTAACATTTCCAGAGAAAGTT 305140 || ||||||| || || ||| | || ||||||||||| || |||| |||||||| ||| Sbjct 3214 TTGATGAATTGGGGGTCCCA-TGGAGTATTGCTTTAAATCTCACATATCCAGAGACTGTT 3156 Query 305141 A 305141 | Sbjct 3155 A 3155 >seq588 Length=109198 Score = 87.8 bits (96), Expect = 4e-12 Identities = 165/238 (69%), Gaps = 11/238 (5%) Strand=Plus/Plus Query 110522 TTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGA 110581 |||||| ||| | | || || |||||| ||||||||| || ||||| || | ||||| Sbjct 13044 TTGCTTCCTTGTGTGCATGAAAGATGATAGTATTGAAGGCATATATGAGACTTTAAAAGA 13103 Query 110582 AACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTAT-TCACGTTCATGATATTCGCT 110640 |||| | ||| ||| |||||||||||||| | ||| ||||| ||||||| Sbjct 13104 GTGTGCTATCATTAGCAAATCTGCTGGAGGAATTGGTGTCTCA-GTTCACAATATTCGTG 13162 Query 110641 CAAAAGGAGCAAATAT---CGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGT 110697 | | ||| |||| | |||| || || | || | ||| ||||||||||| Sbjct 13163 CTACAGGCAGTTATATTCGTGGAACA---AATGGGACATCTAATGGCATTGTTCCAATGC 13219 Query 110698 TAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA---GGTGGTAAGAGAAATGG 110752 || | || ||||| || |||||| |||||| ||||| ||||| ||||| || || Sbjct 13220 TACGGGTATTCAATGATACTGCACGATATGTTGATCAAGGGGGTGGCAAGAGGAAAGG 13277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184781440456029