Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_025428.1 Length=59601 Score E Sequences producing significant alignments: (Bits) Value seq88363 86.0 2e-12 seq65096 82.4 3e-11 >seq88363 Length=878 Score = 86.0 bits (94), Expect = 2e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 10759 TTCATCGAGCGCGTCGAGCGCCTGGAGGTCGAGAAGAAGGACATCGCGGACCAGGTGAAG 10818 |||||||||||| |||||||| |||||| || |||||| | | | ||| || | ||| Sbjct 492 TTCATCGAGCGCATCGAGCGCTTGGAGGAGGACAAGAAGACCGTGTCCGACGAGATCAAG 433 Query 10819 GAGGTCCTGGCCGAGGCCAAGGCGCGGGGCTACGACACCAAGGTCATGCGCAAGATC 10875 || ||| || |||||||||| ||||||||| |||| |||| ||||||||| Sbjct 432 GACGTCTACGCGGAGGCCAAGGGCACCGGCTACGACGTCAAGATCATCCGCAAGATC 376 >seq65096 Length=1447 Score = 82.4 bits (90), Expect = 3e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 10739 CCGCCTCCGAACTGCGCCAGTTCATCGAGCGCGTCGAGCGCCTGGAGGTCGAGAAGAAGG 10798 ||||| ||| ||| ||||||||||||||| | |||||||| |||| |||||| | Sbjct 1284 CCGCCGACGAGCTGAAGCAGTTCATCGAGCGCCTGGAGCGCCTCGAGGAGGAGAAGGCCG 1225 Query 10799 ACATCGCGGACCAGGTGAAGGAGGTCCTGGCCGAGGCCAAGGCGCGGGGCTACGACACCA 10858 |||| || | | | |||||||| | ||||| |||| || |||| |||| | | Sbjct 1224 GCATCATGGGCGACATCAAGGAGGTGTTCGCCGAATTGAAGGGCCGCGGCTTCGACGCGA 1165 Query 10859 AGGTCATGCGCAAGATCATC 10878 ||| | |||||| ||||||| Sbjct 1164 AGGCCGTGCGCACGATCATC 1145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190299235458934