Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq11270 98.7 9e-16 >seq11270 Length=18388 Score = 98.7 bits (108), Expect = 9e-16 Identities = 347/529 (66%), Gaps = 16/529 (3%) Strand=Plus/Minus Query 46746 GCGTTCGAGCACGTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAG 46805 ||| | ||| ||| || ||||| || |||||| |||||||| || ||||||||| Sbjct 5720 GCGATGGAGACCGTTCCTTGCGTGGCGAAGAAGGCCGAGTGGGCCCTGCGGTGGATCGAC 5661 Query 46806 AGCGAGACCGCCACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGttt 46865 ||| || | || | |||||| | | | || ||||| ||||||||| | || Sbjct 5660 GGCG-GA--GAATCGTTCGCCGAGAGGCTCATCGCTTTCGCCTGCGTCGAAGGCATTTTC 5604 Query 46866 ttttCGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTG 46925 || || || || || ||| || |||| | |||| || ||||||| || | Sbjct 5603 TTCTCCGGTAGCTTCTGCGCGATATTTTGGCTAAAAAAGCGCGGGTTAATGCCCGGGTTA 5544 Query 46926 ACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTC 46985 || ||| ||||||||||||||||| |||||||| || ||| || || ||||| || Sbjct 5543 ACCTTCTCCAACGAGTTGATCTCGCGAGACGAAGGCCTCCACTGCGATTTCGCGTGCCTG 5484 Query 46986 TATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGA-CACGATCCTGAGCATGTTTAG 47044 ||| || | | || |||| | | | ||| | || | | | || || | Sbjct 5483 CTCTAC---ACTCTCTTGCGCAAGAAGCTGAGCGAGGAGCGCG-TGAAGGGGATCGTTCG 5428 Query 47045 GGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCCGTCGCCTTGCTG 47102 || |||||| || || | ||||||| | |||| ||||||||| ||| ||| | Sbjct 5427 CGACGCGGTGGATATAGAGAGGGAGTTTGT--GTGCGACGCGCTGCCCTGCGCGTTGGTT 5370 Query 47103 GGCATGAACGCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGT 47161 || ||||||| | ||| ||| || | || || ||||||||||| || | || |||| Sbjct 5369 GGGATGAACG-GCGATCTGATGAGCCAGTACATCGAGTTTGTGGCTGACAGGCTTTTGG- 5312 Query 47162 GCAGCTCGGACAACCGAAATAT-TTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACA 47220 || | || | || || | |||| || || || ||||| | ||| | | Sbjct 5311 GCGCGTTGGGGTGTGGCAAAATCTACAATGTTCAGAACCCATTTGATTGGATGGAGCTGA 5252 Query 47221 TTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 ||||| | | || || |||||||| |||||||| |||| || ||||| Sbjct 5251 TTTCGTTGCAAGGAAAGACCAATTTCTTCGAGAAGAGAGTTGGGGAGTA 5203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475815324830040