Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq105869 109 5e-19 seq3441 109 5e-19 seq124414 104 2e-17 seq16751 93.3 4e-14 seq10846 93.3 4e-14 seq72010 82.4 7e-11 >seq105869 Length=645 Score = 109 bits (120), Expect = 5e-19 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771 |||||| | ||| | ||||||||| |||| | ||||||||| |||||||||||||| Sbjct 338 GCTCGACAAGATTCTCGTTCACGATTCCGTCTGAGGCAGCGAAGAAGGCGAGAACGTGGG 397 Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831 || ||||||||| || | ||| |||| |||||||| || | || |||||||| | Sbjct 398 AAATAAAGAATCGCTCATCGTCATTCAAGCGCTTGTTCCAATCATGAAGATCCTTGGATA 457 Query 110832 TGTCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCAAAGAT 110891 |||||||| ||| | ||||| | | | |||||||||||| ||||| |||| Sbjct 458 GATCGATCTCCTCGGCAGTCCAGAAGGATGCCTCAGCCTTCTTGTACATTTGCC--AGAT 515 Query 110892 CT 110893 || Sbjct 516 CT 517 >seq3441 Length=50379 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | || ||||| | ||||| | || || ||| | | Sbjct 15057 ATGCAGATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 14998 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| ||||| || || ||||| || || || |||||| Sbjct 14997 GATACTATTGACAATGTGAAAGCGAAAATCCAGGACAAGGAGGGAATCCCACCAGATCAG 14938 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| ||||||| || || |||||| | ||||||| | ||| | | ||| |||||| Sbjct 14937 CAAAGGCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTTGCCGACTACAAT 14878 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || || ||||| |||||| | || || ||| Sbjct 14877 ATCCAGAAAGAGTCCACCCTCCACTTGGTG 14848 >seq124414 Length=715 Score = 104 bits (114), Expect = 2e-17 Identities = 158/224 (71%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 25161 TTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCG 25220 |||||| |||| ||||| | ||||| ||||| | || ||||| | ||||| | | Sbjct 527 TTCAATCCAACAG-ATGCAGATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTG 469 Query 25221 AAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTA 25280 | || ||| | ||||||||| || | || ||| ||||| || || || || | Sbjct 468 AGGTTGAAAGCTCCGATACTATTGACAATGTGAAAGCGAAAATCCAGGACAAGGAAGGAA 409 Query 25281 TACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATG 25340 | || || ||||||||||| ||||||| || || |||||| | ||||||| | ||| | Sbjct 408 TCCCACCAGATCAGCAAAGGCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTC 349 Query 25341 TCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 | ||| |||||||| || ||||| || ||| | || || ||| Sbjct 348 TTGCCGACTACAATATCCAGAAAGAGTCTACCCTCCACTTGGTG 305 >seq16751 Length=10463 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || || |||||| | || || | ||||| || | Sbjct 6975 ATGCAAATTTTTGTGAAGACCTTGACTGGAAAAACCATTACTTTGGAAGTTGAGAGCTCT 6916 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| |||||| || || |||||||| || || || ||| Sbjct 6915 GACACCATTGATAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCAGACCAG 6856 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | | |||||||||||| ||||||| | | | | ||| |||||| Sbjct 6855 CAGAGGTTGATCTTTGCCGGCAAACAACTTGAAGATGGTCGCACACTTGCCGACTACAAT 6796 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || ||||| ||||||||| |||| | ||| | | | ||||| |||| Sbjct 6795 ATCCAAAAGGAATCCACCCTTCACCTGGTGCTCCGGCTTAGAGGTGGAA 6747 >seq10846 Length=19378 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || || |||||| | || || | || || || | Sbjct 11502 ATGCAAATTTTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTCT 11443 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| || || || ||||||||||| || || || || Sbjct 11442 GATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACCAA 11383 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 || || || |||| | ||||| || | ||||||| || || | ||| |||||||| Sbjct 11382 CAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAG-AACCTTAGCTGATTACAA 11324 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||| || || ||| | || || ||| | ||||| ||||||||| Sbjct 11323 CATTCAAAAGGAGTCGACCCTGCACTTGGTGCTGCGATTGCGAGGAGGAA 11274 >seq72010 Length=1221 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/182 (70%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771 |||||| | || | ||| ||||| | |||| ||||||||| |||||||||||||| Sbjct 890 GCTCGAGCAAGTTCTCGTTTACGATACCATCGGAGGCAGCGAAGAAGGCGAGAACGTGAG 831 Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831 | |||| | || || | ||||| || ||||||||||| | || |||||||| | Sbjct 830 AGATAAAGTAACGCTCATCATCGTTAAGACGGTTGTTCCAGTCGTGAAGATCCTTGGATA 771 Query 110832 TGTCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCAAAGAT 110891 |||| |||||| | ||||| | | | || ||||||||| ||||| |||| Sbjct 770 GATCGACCTCTTCAGCAGTCCAGAAGGATGCTTCTGCTTTCTTGTACATTTGCC--AGAT 713 Query 110892 CT 110893 || Sbjct 712 CT 711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444351153552480