Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_026430.1
Length=125767
Score E
Sequences producing significant alignments: (Bits) Value
seq10846 102 7e-17
seq23762 86.0 5e-12
seq9176 86.0 5e-12
>seq10846
Length=19378
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318
|||||||||||||||||| || |||||||| || |||||||| |||| || |
Sbjct 11503 AATGCAAATTTTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 11444
Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378
||| || ||| | || ||| || || |||||||| || | || || ||
Sbjct 11443 TGATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACCA 11384
Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438
||| ||||| |||| ||| ||||| || || |||||| | ||| | | ||||||||
Sbjct 11383 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGAACCTTAGCTGATTACAA 11324
Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487
||| ||||| || || || || || || || || | || |||||||||
Sbjct 11323 CATTCAAAAGGAGTCGACCCTGCACTTGGTGCTGCGATTGCGAGGAGGA 11275
Score = 91.5 bits (100), Expect = 1e-13
Identities = 143/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318
|||||| ||||| || || || |||||||| || ||||| ||| |||| ||| |
Sbjct 11275 AATGCAGATTTTCGTGAAGACTTTGACTGGGAAAACCATAACCTTGGAGGTTGAAAGCTC 11216
Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378
||| || ||| | | ||||| ||| || ||||| ||||| | || || ||
Sbjct 11215 AGATACTATTGACAATGTGAAGGCAAAGATACAAGACAAGGAAGGTATACCACCAGACCA 11156
Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438
||||||||||||| ||| ||||| || | |||||| | ||| | | ||||||||
Sbjct 11155 GCAAAGGCTTATTTTTGCAGGCAAGCAGCTTGAAGATGGAAGGACTCTTGCAGATTACAA 11096
Query 106439 CATACAAAAAGAATCTACACTACAT 106463
||||| || || ||||| || |||
Sbjct 11095 TATACAGAAGGAGTCTACCCTTCAT 11071
>seq23762
Length=5545
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318
|||||| |||||||| || || |||||||| || ||||| ||| |||| ||| |
Sbjct 880 AATGCAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTTGAAAGCTC 939
Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378
|| || ||| | | || || || || ||||| ||||| | || | || ||
Sbjct 940 AGACACTATTGACAATGTCAAGGCCAAGATACAAGACAAGGAAGGTATCCCACTAGACCA 999
Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438
|||||||||||| | ||| || | ||| | |||||| | ||| | | ||||||||
Sbjct 1000 ACAAAGGCTTATCTTTGCAGGAACGCAACTTGAAGATGGAAGGACTCTTGCAGATTACAA 1059
Query 106439 CATACAAAAAGAATCTACACTACATTTAGT 106468
|| ||||| || ||||| || ||| ||||
Sbjct 1060 TATCCAAAAGGAGTCTACCCTTCATCTAGT 1089
>seq9176
Length=23001
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412
||||| ||||| | ||| || ||||| ||||| |||| ||| ||||| ||||| |||
Sbjct 19880 GACAAGGAAGGTATCCCCCCAGACCAACAGAGGCTGATTTTTGCTGGCAAGCAATTGGAA 19939
Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472
||| | |||| | | ||||||||||| ||||| || || ||||| || | || |||
Sbjct 19940 GATGGTCGAACTCTTGCTGATTACAACATCCAAAAGGAGTCGACACTTCACCTGGTTTTG 19999
Query 106473 AGGTTACGAGGAGGA 106487
|| | || ||||||
Sbjct 20000 AGACTTCGGGGAGGA 20014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 401674560766112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |