Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_026584.1 Length=109871 Score E Sequences producing significant alignments: (Bits) Value seq101272 111 1e-19 seq58751 105 5e-18 seq111358 95.1 8e-15 seq89170 89.7 4e-13 seq69458 86.0 4e-12 >seq101272 Length=699 Score = 111 bits (122), Expect = 1e-19 Identities = 219/323 (68%), Gaps = 6/323 (2%) Strand=Plus/Minus Query 99921 GTCGAGCAGGATCGGGTCGACCTCCCCGGCCGGCACGAACTCCACGACGTCAATCACCTT 99980 ||||| | ||| |||||||| || | || |||||||||||| ||||| || ||| | Sbjct 521 GTCGAACCGGACCGGGTCGATCTGCTCGCTCGGCACGAACTCGACGACCTCGATCTCGCG 462 Query 99981 GTTGGTTTCGCTGGGCAGTTCTGCCAAGTCCTCATTGGTCAGTAGGGCGGTTTGCCCGTC 100040 | | ||| |||||| | | ||| || |||| || | | |||| ||| | Sbjct 461 GCTCCGCTCGACGGGCAGGGCCTTGAGGTCGTCGCTGGTGAGGACGACGGTGGTGCCGCC 402 Query 100041 GACCTCGAACACCTTGCCCAGATCGGCCGTGTGGACCTGCTCCCCACACGTCTCACAGAC 100100 ||||| || ||||| | | ||||| || |||| || ||| ||| ||| || Sbjct 401 CTCCTCGTACGCCTTGTCGATGTCGGCGTAGTCGACCGTCTTCCCGCACACCTCGCA--- 345 Query 100101 CTTGTG---GTAGCGAATCCGCCCGCCGTCCTGGACGTGCGCCAGATGGCCCTTCAGGTC 100157 |||| | |||||| || |||||||||||| | ||||| || | || ||| ||| Sbjct 344 CTTGCGCTCGTAGCGGATGCGCCCGCCGTCCGCGCCGTGCACCTGGTGCAGGCTCACGTC 285 Query 100158 GTGTTCCTCGGTGGCCGCGTACATCTTCACCGGCACGTTGACCAACCCGAAGTTGACCGC 100217 ||| |||| ||||| ||| | | ||||| ||||| |||| ||||| ||| ||| Sbjct 284 GTGGTCCTGCGTGGCGCTGTAGAGCCGGACCGGGACGTTCACCAGGCCGAACGTGATCGC 225 Query 100218 GCCTGTCCAAACTGCTCTCATGC 100240 || ||||| | |||||||||| Sbjct 224 CCCGGTCCAGATCGCTCTCATGC 202 >seq58751 Length=1734 Score = 105 bits (116), Expect = 5e-18 Identities = 198/286 (69%), Gaps = 9/286 (3%) Strand=Plus/Plus Query 97552 CGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGA 97611 |||||| | | | | ||| ||| | |||| ||||||||||| || |||| |||||| Sbjct 854 CGGGCATGTAGAGCATGTCGCCCTTGCCCAGCAGCTGCTCGGCCCCCTGCTCGCCCAGGA 913 Query 97612 TCACCCGGCTATCGGTGAGTGATGCTGTGGCGAA-CGAGAGCCTAGACGGCACGTTGGAT 97670 | || |||| | || || || | ||| ||||| | | ||||| |||| Sbjct 914 TGGTGCGCGAATCGATCT-TGCTGGTGACGTGAAACGAGATGCGCGTCGGCAGATTGGCC 972 Query 97671 TTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATA 97730 ||||| | ||| |||| || || || || |||||||||||||||| || ||| || || Sbjct 973 TTGATGACGCCGGTGATGACGTCGACCGACGGCCGCTGCGTCGCCATGATGAGGTGGATG 1032 Query 97731 CCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAG 97790 || || ||||||||||| || || | || || | |||||| || |||| Sbjct 1033 CCCGCCGCGCGCGCCTTTTGCGCCAGCCGCTGGATCAGGAACTCGACCTC---CTTG--C 1087 Query 97791 CCGCC--CATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGAT 97834 ||||| |||||| ||||| || || |||||||| | |||||||| Sbjct 1088 CCGCCGTCATCATCAGGTCGGCCAGCTCGTCGACGATCACCACGAT 1133 Score = 98.7 bits (108), Expect = 7e-16 Identities = 182/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 97880 CATCTGCCGGTACCGGTCATCCATCT---CCACGGTGAGCCACCGCAGCGTCTTAACCGC 97936 |||||| || || ||||| ||||||| |||| | ||| ||||| ||||| Sbjct 1293 CATCTGGCGATAGCGGTCCTCCATCTGCTCCACCGC---CCATTTCAGCGCGCGCACCGC 1349 Query 97937 CTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAG 97996 || | | || |||||||| || || || ||||||||||| ||| ||| | | | Sbjct 1350 CTTGGCCGGGTCGGTGACGACGGGGGACAGCAGGTGGGGGATGTCGTCGTACATGCTCAA 1409 Query 97997 TTCCACCATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAG 98056 || | |||||| |||||||||||||| | | | | | || || | |||||||| Sbjct 1410 CTCGAGCATCTTGGGGTCGATCATGATCATCCGGCACTGTTCGGGCGTCAGCCGGTAGAG 1469 Query 98057 CATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCAC 98116 || || | | ||| |||||| | ||||||||||| ||||||| ||| || || Sbjct 1470 CAGCGACAGGATCATGCAGTTGAGCCCGACCGACTTGCCCGAGCCGGTGGTGCCCGCAAC 1529 Query 98117 CAGCAGGTGGGGCATTTTGGCCAGGT 98142 ||||| ||| ||||| ||| |||| Sbjct 1530 CAGCAAGTGCGGCATGGGGGCGAGGT 1555 >seq111358 Length=586 Score = 95.1 bits (104), Expect = 8e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 97518 GCGCCCTGTATCCGGATGGCACCCCGCGCCCCCACGGGCAGGAATAACCCGTCACCCATT 97577 |||||||| || ||||| || | || |||| |||||||| | |||||| ||| Sbjct 182 GCGCCCTGGATGCGGATCGCCTTGCTGGCGCCCATCGGCAGGAACAGCCCGTCGCCCTGG 123 Query 97578 CCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGTGATGCT 97637 || | |||| || || ||| ||| |||||||||||||||||| |||||| || | Sbjct 122 CCGAGCAGCTTGTCCGCGCCGACCTGGTCCAGGATCACCCGGCTGTCGGTGGAGGACGAC 63 Query 97638 GTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACG 97697 |||||| | ||| | |||||||| | ||||| ||||| ||||| || || ||| Sbjct 62 ACGGCGAAGGCGAGGCGGCTGGGCACGTTCGCCTTGATCAGGCCGGTGACCACGTCGACG 3 Query 97698 GA 97699 || Sbjct 2 GA 1 >seq89170 Length=865 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 100105 TGGTAGCGAATCCGCCCGCCGTCCTGGACGTGCGCCAGATGGCCCTTCAGGTCGTGTTCC 100164 |||||||| || || |||||||| | |||| || | || | |||||||| ||| Sbjct 133 TGGTAGCGGATGCGGCCGCCGTCGGCGTTGTGCACCTGGTGCAGCGGGAGGTCGTGGTCC 74 Query 100165 TCGGTGGCCGCGTACATCTTCACCGGCACGTTGACCAACCCGAA 100208 ||||| |||||||||| |||||| ||||||||||||| |||||| Sbjct 73 TCGGTCGCCGCGTACAGCTTCACGGGCACGTTGACCAGCCCGAA 30 >seq69458 Length=1299 Score = 86.0 bits (94), Expect = 4e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 97968 AGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGC 98027 ||||| ||||| || | ||| ||||| ||||| ||| ||||| | || | | Sbjct 826 AGGTGCGGGATGCCCTCGTAGATCGTGAGCTCCACGCGCTTGGGGTCCACCAGCACCATG 767 Query 98028 TTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTG 98087 |||| || || |||| || ||| || || | ||||||||| | |||||| Sbjct 766 CGGACCTCGTCGGGGGTGGCGCGCATGAGGATCGAGGTGATCATCGAGTTCACGAAGCTC 707 Query 98088 GACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGGGGCATTTTGGCCAGGTTC 98144 ||||||||||| ||||| || || || || |||||||||||||| || || |||||| Sbjct 706 GACTTGCCCGAGCCGGTCGCCCCGGCGACGAGCAGGTGGGGCATCTTCGCGAGGTTC 650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350890178465128