Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_026584.1
Length=109871
Score E
Sequences producing significant alignments: (Bits) Value
seq101272 111 1e-19
seq58751 105 5e-18
seq111358 95.1 8e-15
seq89170 89.7 4e-13
seq69458 86.0 4e-12
>seq101272
Length=699
Score = 111 bits (122), Expect = 1e-19
Identities = 219/323 (68%), Gaps = 6/323 (2%)
Strand=Plus/Minus
Query 99921 GTCGAGCAGGATCGGGTCGACCTCCCCGGCCGGCACGAACTCCACGACGTCAATCACCTT 99980
||||| | ||| |||||||| || | || |||||||||||| ||||| || ||| |
Sbjct 521 GTCGAACCGGACCGGGTCGATCTGCTCGCTCGGCACGAACTCGACGACCTCGATCTCGCG 462
Query 99981 GTTGGTTTCGCTGGGCAGTTCTGCCAAGTCCTCATTGGTCAGTAGGGCGGTTTGCCCGTC 100040
| | ||| |||||| | | ||| || |||| || | | |||| ||| |
Sbjct 461 GCTCCGCTCGACGGGCAGGGCCTTGAGGTCGTCGCTGGTGAGGACGACGGTGGTGCCGCC 402
Query 100041 GACCTCGAACACCTTGCCCAGATCGGCCGTGTGGACCTGCTCCCCACACGTCTCACAGAC 100100
||||| || ||||| | | ||||| || |||| || ||| ||| ||| ||
Sbjct 401 CTCCTCGTACGCCTTGTCGATGTCGGCGTAGTCGACCGTCTTCCCGCACACCTCGCA--- 345
Query 100101 CTTGTG---GTAGCGAATCCGCCCGCCGTCCTGGACGTGCGCCAGATGGCCCTTCAGGTC 100157
|||| | |||||| || |||||||||||| | ||||| || | || ||| |||
Sbjct 344 CTTGCGCTCGTAGCGGATGCGCCCGCCGTCCGCGCCGTGCACCTGGTGCAGGCTCACGTC 285
Query 100158 GTGTTCCTCGGTGGCCGCGTACATCTTCACCGGCACGTTGACCAACCCGAAGTTGACCGC 100217
||| |||| ||||| ||| | | ||||| ||||| |||| ||||| ||| |||
Sbjct 284 GTGGTCCTGCGTGGCGCTGTAGAGCCGGACCGGGACGTTCACCAGGCCGAACGTGATCGC 225
Query 100218 GCCTGTCCAAACTGCTCTCATGC 100240
|| ||||| | ||||||||||
Sbjct 224 CCCGGTCCAGATCGCTCTCATGC 202
>seq58751
Length=1734
Score = 105 bits (116), Expect = 5e-18
Identities = 198/286 (69%), Gaps = 9/286 (3%)
Strand=Plus/Plus
Query 97552 CGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGA 97611
|||||| | | | | ||| ||| | |||| ||||||||||| || |||| ||||||
Sbjct 854 CGGGCATGTAGAGCATGTCGCCCTTGCCCAGCAGCTGCTCGGCCCCCTGCTCGCCCAGGA 913
Query 97612 TCACCCGGCTATCGGTGAGTGATGCTGTGGCGAA-CGAGAGCCTAGACGGCACGTTGGAT 97670
| || |||| | || || || | ||| ||||| | | ||||| ||||
Sbjct 914 TGGTGCGCGAATCGATCT-TGCTGGTGACGTGAAACGAGATGCGCGTCGGCAGATTGGCC 972
Query 97671 TTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATA 97730
||||| | ||| |||| || || || || |||||||||||||||| || ||| || ||
Sbjct 973 TTGATGACGCCGGTGATGACGTCGACCGACGGCCGCTGCGTCGCCATGATGAGGTGGATG 1032
Query 97731 CCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAG 97790
|| || ||||||||||| || || | || || | |||||| || ||||
Sbjct 1033 CCCGCCGCGCGCGCCTTTTGCGCCAGCCGCTGGATCAGGAACTCGACCTC---CTTG--C 1087
Query 97791 CCGCC--CATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGAT 97834
||||| |||||| ||||| || || |||||||| | ||||||||
Sbjct 1088 CCGCCGTCATCATCAGGTCGGCCAGCTCGTCGACGATCACCACGAT 1133
Score = 98.7 bits (108), Expect = 7e-16
Identities = 182/266 (68%), Gaps = 6/266 (2%)
Strand=Plus/Plus
Query 97880 CATCTGCCGGTACCGGTCATCCATCT---CCACGGTGAGCCACCGCAGCGTCTTAACCGC 97936
|||||| || || ||||| ||||||| |||| | ||| ||||| |||||
Sbjct 1293 CATCTGGCGATAGCGGTCCTCCATCTGCTCCACCGC---CCATTTCAGCGCGCGCACCGC 1349
Query 97937 CTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAG 97996
|| | | || |||||||| || || || ||||||||||| ||| ||| | | |
Sbjct 1350 CTTGGCCGGGTCGGTGACGACGGGGGACAGCAGGTGGGGGATGTCGTCGTACATGCTCAA 1409
Query 97997 TTCCACCATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAG 98056
|| | |||||| |||||||||||||| | | | | | || || | ||||||||
Sbjct 1410 CTCGAGCATCTTGGGGTCGATCATGATCATCCGGCACTGTTCGGGCGTCAGCCGGTAGAG 1469
Query 98057 CATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCAC 98116
|| || | | ||| |||||| | ||||||||||| ||||||| ||| || ||
Sbjct 1470 CAGCGACAGGATCATGCAGTTGAGCCCGACCGACTTGCCCGAGCCGGTGGTGCCCGCAAC 1529
Query 98117 CAGCAGGTGGGGCATTTTGGCCAGGT 98142
||||| ||| ||||| ||| ||||
Sbjct 1530 CAGCAAGTGCGGCATGGGGGCGAGGT 1555
>seq111358
Length=586
Score = 95.1 bits (104), Expect = 8e-15
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 97518 GCGCCCTGTATCCGGATGGCACCCCGCGCCCCCACGGGCAGGAATAACCCGTCACCCATT 97577
|||||||| || ||||| || | || |||| |||||||| | |||||| |||
Sbjct 182 GCGCCCTGGATGCGGATCGCCTTGCTGGCGCCCATCGGCAGGAACAGCCCGTCGCCCTGG 123
Query 97578 CCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGTGATGCT 97637
|| | |||| || || ||| ||| |||||||||||||||||| |||||| || |
Sbjct 122 CCGAGCAGCTTGTCCGCGCCGACCTGGTCCAGGATCACCCGGCTGTCGGTGGAGGACGAC 63
Query 97638 GTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACG 97697
|||||| | ||| | |||||||| | ||||| ||||| ||||| || || |||
Sbjct 62 ACGGCGAAGGCGAGGCGGCTGGGCACGTTCGCCTTGATCAGGCCGGTGACCACGTCGACG 3
Query 97698 GA 97699
||
Sbjct 2 GA 1
>seq89170
Length=865
Score = 89.7 bits (98), Expect = 4e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 100105 TGGTAGCGAATCCGCCCGCCGTCCTGGACGTGCGCCAGATGGCCCTTCAGGTCGTGTTCC 100164
|||||||| || || |||||||| | |||| || | || | |||||||| |||
Sbjct 133 TGGTAGCGGATGCGGCCGCCGTCGGCGTTGTGCACCTGGTGCAGCGGGAGGTCGTGGTCC 74
Query 100165 TCGGTGGCCGCGTACATCTTCACCGGCACGTTGACCAACCCGAA 100208
||||| |||||||||| |||||| ||||||||||||| ||||||
Sbjct 73 TCGGTCGCCGCGTACAGCTTCACGGGCACGTTGACCAGCCCGAA 30
>seq69458
Length=1299
Score = 86.0 bits (94), Expect = 4e-12
Identities = 125/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 97968 AGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGC 98027
||||| ||||| || | ||| ||||| ||||| ||| ||||| | || | |
Sbjct 826 AGGTGCGGGATGCCCTCGTAGATCGTGAGCTCCACGCGCTTGGGGTCCACCAGCACCATG 767
Query 98028 TTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTG 98087
|||| || || |||| || ||| || || | ||||||||| | ||||||
Sbjct 766 CGGACCTCGTCGGGGGTGGCGCGCATGAGGATCGAGGTGATCATCGAGTTCACGAAGCTC 707
Query 98088 GACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGGGGCATTTTGGCCAGGTTC 98144
||||||||||| ||||| || || || || |||||||||||||| || || ||||||
Sbjct 706 GACTTGCCCGAGCCGGTCGCCCCGGCGACGAGCAGGTGGGGCATCTTCGCGAGGTTC 650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 350890178465128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |