Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq67250 170 7e-38 seq89734 141 3e-29 seq79385 95.1 4e-15 seq105879 87.8 6e-13 >seq67250 Length=1371 Score = 170 bits (188), Expect = 7e-38 Identities = 473/713 (66%), Gaps = 37/713 (5%) Strand=Plus/Minus Query 4520 GCCAAGCTCCTGATCGTGGACGAGTCGTCCATGGTCGACGAGTCGGTCGGTGAAGACCTC 4579 ||| | ||| | ||| | ||||| | || ||||| |||||| |||| |||||| Sbjct 703 GCCGACCTCATCATCATCGACGAATGCTCGATGGTGGACGAGGAACTCGGCCGCGACCTC 644 Query 4580 CTGTCGTTCGGTGTGCCAATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCGGTGGCC 4639 ||||| ||||| ||| |||| | ||||||||| |||| ||||||||||| ||| Sbjct 643 CTGTCCTTCGGCAAGCCCGTCCTGGTGCTGGGCGACACCGCGCAGCTGCCGCCCGTGAAG 584 Query 4640 GGGGCTGGATTCTTCACCAA-GCAGAAGGCCGACTTCCTGCTGACCGACATCCACCGCCA 4698 || | || ||||||||| | || || | ||||| | |||||||||| | || ||||| Sbjct 583 GGCGGCGGCTTCTTCACCGACGCCGA-GCCCGACGTGATGCTGACCGAGGTGCATCGCCA 525 Query 4699 GGCCCGCGACAACCCCATCATTGAGATGTCGCGCATCGTCCGCGAGGGTGGAACCCTGAA 4758 ||| |||||| |||||||| |||||| | || ||||||||||| ||| | Sbjct 524 GGCGGCCGACAATCCCATCATCCGCATGTCGATGACGGTGCGCGAGGGTGGCCGGCTGCA 465 Query 4759 CCTGGGCCGCTACGGAGACAGCGAAGTCGTCCGGGGCGCTGACTTCCAGCGCGAC-TGGG 4817 || ||| ||| || || |||| || |||| | || || || || ||| | | | Sbjct 464 GCTCGGCGCCTATGGCGAGAGCGGGGTGCTCCGCCGTGCCGAGATCGAG-GCGCCGCGCG 406 Query 4818 TATTCCAGGCTGACCAGATTCTCGTCGGGAAAAACGACACCCGCCGAGCCTACAACGCTC 4877 | | ||| | |||||| | || ||||| | ||| | ||||| || |||||||||| | Sbjct 405 TGATGCAGTCCGACCAGGTGCTGGTCGGCATCAACAAGACCCGGCGCGCCTACAACGGCC 346 Query 4878 GCATCCGCGAGCTGCGCGGGGCCGACC-GAGCTTACCCTCTCAAGGGCGACAAGCTGGTC 4936 |||| ||| ||||| ||| | || | | | || | ||||| ||||| || Sbjct 345 GCATGCGCACGCTGC-TGGGCCATTCCGGCGACAAGCCGGAGATCGGCGAGAAGCTCGTG 287 Query 4937 TGCCTTCGCAACAACCACGACTCGGGCCTGCTGAACGGCTCCCTCTGGACGGTCGAGACC 4996 ||||| |||||| || | | ||||||||| |||||| | ||||| ||| | || Sbjct 286 TGCCTGCGCAACGACAAGAAGAAGGGCCTGCTCAACGGCGGCACCTGGATCGTCACGGCC 227 Query 4997 GCCC---TGGACACCGGGGACGGGTT---------CGTCTCCCTGGAGCTGCAAGGCGAG 5044 | || ||| ||| | | ||| |||| | |||| | | ||| || Sbjct 226 GTCCACGCCGACCGCGGCGCCAAGTTCTCGTTCAGCGTCAGGCCGGAGGAGGAGGGCAAG 167 Query 5045 -GAGAGCC--AGCGGGT-GGCGT-CTGTCGCCCACGGGTGCCTGTTCCACGGGCAGAACC 5099 | |||| |||||| ||||| ||| || | | | ||| | |||| || Sbjct 166 CGCAAGCCCGTGCGGGTGGGCGTGCTGCCGGC--------CTTCTTCGAGGGGCGCGACG 115 Query 5100 CGGA---GTGGTACG---AGAAGAAAGAGGCGGACGAGTTCGACTACGGGTACGCCATGA 5153 ||| |||| ||||| ||| ||||| ||||||||| ||| ||||| ||| Sbjct 114 AGGACATCCCCTACGCGCAGAAGCGCGAGTCGGACCAGTTCGACTTCGGCTACGCGCTGA 55 Query 5154 CAGTGCACAAATCCCAGGGTTCCCAGTGGGATGACGTGCTCGTCATCGACGAG 5206 | || ||||| | ||||| || |||||||| |||||| | | |||||||| Sbjct 54 CGGTCCACAAGGCGCAGGGCTCGCAGTGGGACGACGTGGTGCTGTTCGACGAG 2 Score = 104 bits (114), Expect = 8e-18 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 4175 TTCCGCCTGTTCGGGTATGCCGGCACGGGCAAGACCACCCTGGCCCGCCACATCGCTGAG 4234 |||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| ||| Sbjct 937 TTCCGCCTGTTCGGCTATGCCGGCACCGGCAAGACCACGCTGGCGAAGCAGATCGCCGAG 878 Query 4235 AACGTGGACGGGC-TTGTGCTGTTCGCCGCCCCGACCGGCAAGGCCGCCTACGTCCTGAA 4293 ||| | ||||| || |||| ||| || |||||||||||| || ||||| Sbjct 877 GACG-CGCCGGGCGAGGTCGCCTTCGGGGCCTACACGGGCAAGGCCGCCCTGGTGCTGAA 819 Query 4294 GACCAAGGGCTGCCCGAACACCAGCACGATCCACCAGCTGATCTAC 4339 | |||||||||||| | | || ||| ||||| | |||||||| Sbjct 818 GTCCAAGGGCTGCCGGGGCGCCTCCACCATCCATTCGATGATCTAC 773 >seq89734 Length=855 Score = 141 bits (156), Expect = 3e-29 Identities = 328/483 (68%), Gaps = 20/483 (4%) Strand=Plus/Plus Query 4517 AAGGCCAAGCTCCTGATCGTGGACGAGTCGTCCATGGTCGACGAGTCGG---TCGGTGAA 4573 |||||| | ||| | || | ||||||| || |||||||| || | |||| | Sbjct 189 AAGGCCGACCTCATCGTCATCGACGAGTGCTCGATGGTCGAT---TCCGACCTCGGCCAC 245 Query 4574 GACCTCCTGTCGTTCGGTGTGCCAATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCG 4633 ||||| |||||||||| ||| | || | || |||||||| || |||||||||||| Sbjct 246 GACCTGCTGTCGTTCGACAAGCCGGTGCTGGTGCTCGGCGACCCGGCGCAGCTGCCGCCG 305 Query 4634 GTGGCCGGGGCTGGATTCTTCACCAAGCAGAAGGCCGACTTCCTGCTGACCGACATCCAC 4693 ||| ||| | || ||||||||| || || ||||| | |||||||||| ||||| Sbjct 306 GTGCGCGGCGGCGGCTTCTTCACCGAGGCCGAGCCCGACGTGATGCTGACCGAGGTCCAC 365 Query 4694 CGCCAGGCCCGCGACAACCCCATCATTGAGATGTCGCGCATCGTCCGCGAGGGTGGAACC 4753 ||||||||| ||| |||| ||| | ||| || | || |||||||| || Sbjct 366 CGCCAGGCCAAGGACGACCCGATCGTGCGCATGGCGATGACGGTGCGCGAGGGCGGCCGG 425 Query 4754 CTGAACCTGGGCCGCTACGGAGACAGCGAAGTCGTC-CGGGGCGCTGACTTCCAGCGCGA 4812 || || ||| ||||| | |||| || ||| || | ||| | | || | | ||| Sbjct 426 CTCGCGCTCGGCGAGTACGGCGCCAGCCGCGTGGTCTCGCGCCGC-GCCATCGA-CCCGA 483 Query 4813 -CTGGGTATTCCAGGCTGACCAGATTCTCGTCGGGAAAAACGACACCCGCCGAGCCTACA 4871 | ||| || | |||||| | || || || | ||| | |||||||| ||||| Sbjct 484 CCCAGGTGCTCGACTGCGACCAGGTGCTGGTGGGCATGAACAAGACCCGCCGTCTCTACA 543 Query 4872 ACGCTCGCATCCGCGAGCTGCGCGGG----GCCGA-CCGAGCTTACCCTCTCAAGGGCGA 4926 ||| || | || ||||| ||| || | ||| |||| | || | |||||| Sbjct 544 ACGGGCGGCTGCGGGAGCT-CGCCGGCCACGTCGACCCGA---TGCCGGC-GGTGGGCGA 598 Query 4927 CAAGCTGGTCTGCCTTCGCAACAACCACGACTCGGGCCTGCTGAACGGCTCCCTCTGGAC 4986 |||||||||||||| |||||| ||| | | ||||||||| |||||||| |||||| Sbjct 599 GAAGCTGGTCTGCCTGCGCAACGACCGCACCAAGGGCCTGCTCAACGGCTCGACCTGGAC 658 Query 4987 GGT 4989 ||| Sbjct 659 GGT 661 Score = 82.4 bits (90), Expect = 3e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 4215 TGGCCCGCCACATCGCTGAGAACGTGGACGGGCTTGTGCTGTTCGCCGCCCCGACCGGCA 4274 ||||||||| |||||| || |||| ||||| ||| |||||| |||| ||||||| Sbjct 1 TGGCCCGCCGCATCGCCGACGACGTCGACGGCTCGGTGGTGTTCGGCGCCTTCACCGGCA 60 Query 4275 AGGCCGCCTACGTCCTGAAGACCAAGGGCTGCCCGAACACCAGCACGATCCACCAGCTGA 4334 |||| |||| || || |||||||||| | || || ||||||||| ||||| Sbjct 61 AGGCGGCCTCGGTGATGCGCCAGAAGGGCTGCCAGGACGCCGCGACGATCCACTCGCTGA 120 Query 4335 TCTACACCCCGAAGGAGA 4352 ||||| | | ||||||| Sbjct 121 TCTACCGCACCAAGGAGA 138 >seq79385 Length=1039 Score = 95.1 bits (104), Expect = 4e-15 Identities = 179/259 (69%), Gaps = 6/259 (2%) Strand=Plus/Minus Query 36785 TCCAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAGAAGCTCGGCTACCTGC 36844 ||||||| || || | | ||||| || || ||||| | ||| ||| |||| ||||| Sbjct 478 TCCAGCGGCTGATCCTGTCGCGCCCGGCGGTGGAGGCGGGCGAGCGGCTGGGCTTCCTGC 419 Query 36845 CCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGATGCTGGACGCGGTGATCG 36904 |||||| ||| | |||||| | | || || || |||| || |||||| | || Sbjct 418 CCGGCGACATGAAGGAGAAGGTCGACCCCTATCTCCGCCCGCTGTACGACGCGCTCTACG 359 Query 36905 ACCTGGTTGGCCCGACGA--TGGCCAAGCGCCTGCAGGAGACCCGCCAGCTCGAGATCGC 36962 || || | ||||| ||| || | |||| | | | | | || || |||||||||| Sbjct 358 ACATGCT--GCCCGCCGAGCAGGTCGAGCGGC-GGATCGCATCGGCGAGATCGAGATCGC 302 Query 36963 CCCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACACGTTCCTCATCGCCGACGAGAT 37022 || | |||| |||||| ||||| || | ||| ||||| ||||| ||||||| Sbjct 301 GCCCATCGCCTTCATGCGCGGCCGCACGCTGGCGGACGCGTTCATCATCCTCGACGAGGC 242 Query 37023 GCAGAACGCCAC-CCCGCG 37040 ||||||| |||| |||||| Sbjct 241 GCAGAACACCACGCCCGCG 223 >seq105879 Length=641 Score = 87.8 bits (96), Expect = 6e-13 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 36785 TCCAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAGAAGCTCGGCTACCTGC 36844 ||||||| ||| || | | |||||||| |||||||| | ||||||||||||| ||||| Sbjct 108 TCCAGCGCCTCATCCTGTCGCGCCCCGCGGTCGAGGCGGGCGAGAAGCTCGGCTTCCTGC 49 Query 36845 CCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCG 36885 |||||| ||| | |||||| | | |||||| ||| |||| Sbjct 48 CCGGCGACATGAAGGAGAAGGTCGATCCGTATCTGCGCCCG 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180509989493382