Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_026604.1 Length=53636 Score E Sequences producing significant alignments: (Bits) Value seq116094 95.1 4e-15 seq78850 93.3 1e-14 >seq116094 Length=536 Score = 95.1 bits (104), Expect = 4e-15 Identities = 127/175 (73%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 36430 GCGTTGTGCTCCCAGGTCGATCCCGAGCTGTTCTTCCCCGAAAAGGGAG--TAAACGCGA 36487 ||| ||||| ||||| ||| |||||| |||||||||||| ||||| | | || || Sbjct 34 GCGCTGTGCGCCCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGGCGGCTCGACCCGC 93 Query 36488 AACCCGCAAAGCGGATCTGCGGTATGTGCGACGTCCGGGACGAATGCCTTCAGTGGGCGC 36547 | || ||||| ||||| ||||| ||||| | || ||||| ||| |||| Sbjct 94 GAG--GCCAAGCGCGTCTGCCAGTCCTGCGAGGTCCGCCAGGAGTGCCTGGAGTACGCGC 151 Query 36548 TGGACAACAACGAACAGTTCGGCATCTTCGGCGGCCTGTCCGAGCGTGAACGCCG 36602 ||| |||| |||| | ||||||||||| ||||| || ||||| || ||||| || Sbjct 152 TGGGCAACGACGAGCGGTTCGGCATCTGGGGCGGTCTCTCCGAACGCGAACGTCG 206 >seq78850 Length=1053 Score = 93.3 bits (102), Expect = 1e-14 Identities = 126/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 36431 CGTTGTGCTCCCAGGTCGATCCCGAGCTGTTCTTCCCCGAAAAGGGAGTAA--ACGCGAA 36488 || ||||| | ||| |||||| ||| ||||||||| |||||||| | | ||||| Sbjct 549 CGCTGTGCGCGCAGACCGATCCTGAGGCGTTCTTCCCGGAAAAGGGTGGATCGACGCGCG 608 Query 36489 ACCCGCAAAGCGGATCTGCGGTATGTGCGACGTCCGGGACGAATGCCTTCAGTGGGCGCT 36548 | || |||||||||||| |||||| ||| | | ||||| ||| ||||| Sbjct 609 AGGCG--AAGCGGATCTGCACGTCGTGCGAGGTCAAGTCGCAGTGCCTCGAGTACGCGCT 666 Query 36549 GGACAACAACGAACAGTTCGGCATCTTCGGCGGCCTGTCCGAGCGTGAACGCCG 36602 | | ||| |||| | |||||||||| |||||||| |||||||| || ||||| Sbjct 667 GCAGAACGACGAGCGCTTCGGCATCTGGGGCGGCCTCTCCGAGCGCGAGCGCCG 720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171241516077564