Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_026606.1 Length=71200 Score E Sequences producing significant alignments: (Bits) Value seq115307 167 1e-36 seq81249 113 2e-20 >seq115307 Length=544 Score = 167 bits (184), Expect = 1e-36 Identities = 164/209 (78%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 62726 ATGGCCGGTGAAACCACCATAACGGTGATAGGCAATCTGACGAACGATCCCGAATTACGG 62785 ||||| ||||||||| ||| ||| |||| || || || |||||||| |||||| | || Sbjct 208 ATGGCGGGTGAAACCGTCATCACGCTGATCGGGAACCTCACGAACGACCCCGAACTGCGC 149 Query 62786 TTCACGCCGTCCGGCAGCCCGGTGGCCAACTTCACCATTGCCAGCACCCCGCGCACGTTC 62845 ||||| ||||| || | |||||||||||||||| | ||| || || ||||||||| Sbjct 148 TTCACCCCGTCGGGTGCCGCGGTGGCCAACTTCACGGTCGCCTCGACTCCCCGCACGTTC 89 Query 62846 GACCGGCAGAGCAACGAGTGGAAGGACGGGGAAACCCTGTTTTTGCGC-GCGAGTATCTG 62904 ||||| ||| ||||||||||||||||| || || ||||| |||| ||| | ||||| Sbjct 88 GACCGTCAGTCGAACGAGTGGAAGGACGGCGAGACGCTGTTCATGCGTTGCGCG-ATCTG 30 Query 62905 GCGCGACCCCGCGGAGAACGTGGCAGAGT 62933 |||||| | ||||||||||| || |||| Sbjct 29 GCGCGAAGCGGCGGAGAACGTCGCCGAGT 1 >seq81249 Length=1001 Score = 113 bits (124), Expect = 2e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 53438 CGAGTGCTTCCGTGTCCTCAAGCCCGGTGGCCACATTCTCGCGTTCGGTGGTTCCCGCAC 53497 ||||||| |||| ||||||| ||||| || || | ||||| ||||| ||| | ||||| Sbjct 130 CGAGTGCCTCCGCATCCTCAAACCCGGCGGGCAGCTCCTCGCCTTCGGCGGTACTCGCAC 71 Query 53498 GTGGCACCGGCTCGCGTCCGCGGTGGAGGACGCCGGGTTCGAGATTCGGGACTCAATCGC 53557 | ||||| ||||| ||| | ||||||||||| |||||||| || ||||| ||||| Sbjct 70 CTTCCACCGCCTCGCTGCCGGAATCGAGGACGCCGGATTCGAGATCCGCGACTCGATCGC 11 Query 53558 GTGGCTCTAC 53567 |||||||||| Sbjct 10 GTGGCTCTAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 227344453253669