Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_026606.1
Length=71200
Score E
Sequences producing significant alignments: (Bits) Value
seq115307 167 1e-36
seq81249 113 2e-20
>seq115307
Length=544
Score = 167 bits (184), Expect = 1e-36
Identities = 164/209 (78%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 62726 ATGGCCGGTGAAACCACCATAACGGTGATAGGCAATCTGACGAACGATCCCGAATTACGG 62785
||||| ||||||||| ||| ||| |||| || || || |||||||| |||||| | ||
Sbjct 208 ATGGCGGGTGAAACCGTCATCACGCTGATCGGGAACCTCACGAACGACCCCGAACTGCGC 149
Query 62786 TTCACGCCGTCCGGCAGCCCGGTGGCCAACTTCACCATTGCCAGCACCCCGCGCACGTTC 62845
||||| ||||| || | |||||||||||||||| | ||| || || |||||||||
Sbjct 148 TTCACCCCGTCGGGTGCCGCGGTGGCCAACTTCACGGTCGCCTCGACTCCCCGCACGTTC 89
Query 62846 GACCGGCAGAGCAACGAGTGGAAGGACGGGGAAACCCTGTTTTTGCGC-GCGAGTATCTG 62904
||||| ||| ||||||||||||||||| || || ||||| |||| ||| | |||||
Sbjct 88 GACCGTCAGTCGAACGAGTGGAAGGACGGCGAGACGCTGTTCATGCGTTGCGCG-ATCTG 30
Query 62905 GCGCGACCCCGCGGAGAACGTGGCAGAGT 62933
|||||| | ||||||||||| || ||||
Sbjct 29 GCGCGAAGCGGCGGAGAACGTCGCCGAGT 1
>seq81249
Length=1001
Score = 113 bits (124), Expect = 2e-20
Identities = 103/130 (79%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 53438 CGAGTGCTTCCGTGTCCTCAAGCCCGGTGGCCACATTCTCGCGTTCGGTGGTTCCCGCAC 53497
||||||| |||| ||||||| ||||| || || | ||||| ||||| ||| | |||||
Sbjct 130 CGAGTGCCTCCGCATCCTCAAACCCGGCGGGCAGCTCCTCGCCTTCGGCGGTACTCGCAC 71
Query 53498 GTGGCACCGGCTCGCGTCCGCGGTGGAGGACGCCGGGTTCGAGATTCGGGACTCAATCGC 53557
| ||||| ||||| ||| | ||||||||||| |||||||| || ||||| |||||
Sbjct 70 CTTCCACCGCCTCGCTGCCGGAATCGAGGACGCCGGATTCGAGATCCGCGACTCGATCGC 11
Query 53558 GTGGCTCTAC 53567
||||||||||
Sbjct 10 GTGGCTCTAC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 227344453253669
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |