Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_026610.2 Length=56637 Score E Sequences producing significant alignments: (Bits) Value seq29437 95.1 4e-15 seq108880 84.2 8e-12 >seq29437 Length=3691 Score = 95.1 bits (104), Expect = 4e-15 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 20567 GAGATGGTGGTGGTCAAGGATATTCCATTCTTCTCCCATTGCGAACACCATATCGCACCG 20626 || || ||| |||| || || || |||| |||||||||||| ||||| || | ||| Sbjct 2927 GATATCGTGCTGGTGCGCGACATCCCGTTCTACTCCCATTGCGAGCACCACATGGTGCCG 2986 Query 20627 ATCATTGGTCTGGCC-ACAGTAGCCTACATCCCGAACGGGAAGATCGTCGGCCTGTCCAA 20685 |||| || || ||| ||| | ||||| |||| | | | ||||||||||| || Sbjct 2987 TTCATGGGGCTCGCCCACA-TCGCCTATTATCCGACCAAGGGCGTGGTCGGCCTGTCGAA 3045 Query 20686 GATCACGCGCTTGGTCGATGCCTTCGCCCGCCGCCTACAAGTGCAGGAGCGTTTGACCGA 20745 | || | ||| ||||||| |||||||||||||||| || ||||||| |||||| Sbjct 3046 GCTCGCCCGCGTGGTCGACACCTTCGCCCGCCGCCTGCAGACGCAGGAGACGATGACCGC 3105 Query 20746 TCAGATTGC 20754 ||||| || Sbjct 3106 CCAGATCGC 3114 >seq108880 Length=613 Score = 84.2 bits (92), Expect = 8e-12 Identities = 124/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 20584 GGATATTCCATTCTTCTCCCATTGCGAACACCATATCGCACCGATCATTGGTCTGGC-CA 20642 ||| || || ||| |||||||||||| ||||| || | ||| |||| || ||||| || Sbjct 484 GGACATCCCGTTCCACTCCCATTGCGAGCACCACATGGTGCCGTTCATGGGGCTGGCGCA 425 Query 20643 CAGTAGCCTACATCCCGAACGGGAAGATCGTCGGCCTGTCCAAGATCACGCGCTTGGTCG 20702 | | ||||| |||| | | | ||||||||||| ||| || | ||| |||||| Sbjct 424 TA-TCGCCTATTACCCGTCCAAGGGCGTGGTCGGCCTGTCGAAGCTCGCCCGCGTGGTCG 366 Query 20703 ATGCCTTCGCCCGCCGCCTACAAGTGCAGGAGCGTTTGACCGATCAGATTGCG 20755 ||||||||||| ||||| || ||||||| |||| | ||||| ||| Sbjct 365 ATGCCTTCGCCAAGCGCCTGCAGACGCAGGAGACGATGACGGCGCAGATCGCG 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180829481855182