Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq78534 192 8e-44 seq99200 168 9e-37 seq588 122 1e-22 >seq78534 Length=1057 Score = 192 bits (212), Expect = 8e-44 Identities = 388/570 (68%), Gaps = 12/570 (2%) Strand=Plus/Minus Query 69267 CAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTAT 69326 ||||| ||||| || ||||| |||||||| || |||| | | | ||| | || || Sbjct 661 CAGTGAGACAGACGCGAGATTGCAAACTGCGACTTCATCTGGAGCAGTATACTCAATGAT 602 Query 69327 CTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTT 69386 || || || || || | ||||| || ||||| || | || || ||||| ||| Sbjct 601 TTCGGTGCAGAGGTTGGATGACTTGATCGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTT 542 Query 69387 ACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGA 69446 ||||| || ||||| || || || ||| | ||||| ||| |||||| || || || | Sbjct 541 GCAGGCATCTTTGTACAGCATGAATGGATTGCCAGTCTCAGTCTGAGCCTCAATGATGGC 482 Query 69447 TTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCT---TTTTCATATT- 69502 | ||| | | ||| || ||| |||| | | ||| || || ||||||| Sbjct 481 ATACCACAGTTTCTGAGCCTTAATT---GTCTGGCGGCCCTTTCCTGCCTTCTCATATTT 425 Query 69503 -GTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTT 69561 ||| | | ||| |||||||| || || | ||| ||| |||||||||||||| Sbjct 424 GGTGAACAAGGCC--TCGAATTCGTCGCCGTAGCAGTCAGACAAACCAGGACATTCATTG 367 Query 69562 GGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATC 69621 |||||||||| || ||| | ||| | | ||||| ||||| ||||| || |||||| Sbjct 366 GGACACATCAGTGTCCAGTCTGCATTCTTTTCTACTCGCTTCATGAATAGGTCAGGAATC 307 Query 69622 CAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC-TGTAttttttttAAG 69680 || ||||| ||||||||||||| ||| |||||| || || || | ||| | ||| Sbjct 306 CAGAGAGCGTAGAAGAGATCTCTGGCTCTGACTTCTTCTTTGCCGTGGTTCTTTCTCAAG 247 Query 69681 ATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGG 69740 | ||| |||| | | ||||| |||||||| || || || || || | | | || || Sbjct 246 -TTGAGCCACTCGAATACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAGGCACCTGG 188 Query 69741 TCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG 69800 || || || || || ||||| | ||| | |||||||| | | |||||| |||||| || Sbjct 187 TCTCTTGTTGCCGCCTTGATCGACGTACCGAGCAGTGTTGTCAAAGACTCGCAGCATAGG 128 Query 69801 AATAATACCATTAGATTTACCATTTGTTCC 69830 | | ||| || || | || ||||| || Sbjct 127 CGTCAGACCGTTCGAAGTGCCGTTTGTACC 98 >seq99200 Length=725 Score = 168 bits (186), Expect = 9e-37 Identities = 347/513 (68%), Gaps = 6/513 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||||||||| || || | || ||||| | | || | ||||| || ||||| || Sbjct 213 GCAGGCGAAATCTGTGTGCATACCTTCATCACGAGAGATCAGCTCGTTGGAGAATGTCAG 272 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| ||||| | ||| |||||||| || |||| || ||||| || || ||||| Sbjct 273 ACCAGGCATGAGACCTCTCTTCTTGAGCCAGAAAATGGAGGCGAAAGACCCGGAGAAGAA 332 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---G 39792 |||||| || || || || ||||| || || | | || |||| | || |||| Sbjct 333 GATGCCCTCAACGGCGGCGAATGCCACCAGACGTTGGGCGAAACTGCTTTCCTTATCAGA 392 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||| || ||||| ||||| ||||| | || || || || || ||||||| Sbjct 393 GATCCATCTCAACGCCCACTCAGCCTTCTTGCGGATGCATGGAATAGTGTCGATAGCATC 452 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 ||||| || ||||| | | ||||| ||| ||||||| || | || || ||||| Sbjct 453 GAAGAGGTACTGTTTCTGCTTTGGCTCTTTCACAAATGTATCAATGAGCAAGCTGTACAT 512 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 ||| || ||||| || || ||| ||||| || || ||||| |||| || || | | Sbjct 513 TTCGGAGTGGATATTCTCCATCATGATCTGGAAACCATAAAAGCATCGAGCCTCTGGTAC 572 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 ||| ||||| | ||||| || | | || || || || || || ||| || || Sbjct 573 TTGCACCTCACCCGAGAATCTCTCGACAAGGTTCTCGTTGACAATACCGTCAGAGGCAGC 632 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTG-TCAATTTATTCCA 40089 || || || | || ||| ||||| ||| | |||||| | || | || | ||| Sbjct 633 GAAGAAAGCAAGGACGTGTGAGATAAAGTATCTCTCATCGTCGTTGAGCTTGTTGTGCCA 692 Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTC 40122 ||| | ||||||||||| | ||| || ||||| Sbjct 693 GTCGTGCATATCTTTTGAGAGATCCACCTCTTC 725 >seq588 Length=109198 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | |||| ||||| | ||| | || | ||||| |||| ||| ||| Sbjct 13262 CCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTAGCATTGGAACAATGCCA 13203 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 |||||| | |||||||||||| ||||||||| ||| | || |||||||| || || Sbjct 13202 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGAATATTGTGAACTGAG 13143 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| || | |||||| ||| || || |||||||| Sbjct 13142 ACACCAATTCCTCCAGCAGATTTGCTAATGATAGCACACTCTTTTAAAGTCTCATATATG 13083 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || || ||||||||| ||||| | ||| || || ||| Sbjct 13082 CCTTCAATACTATCATCTTTCATGCACACAAGGAAGCAACTA 13041 Score = 89.7 bits (98), Expect = 7e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| || ||||||||||| | ||| | || || | Sbjct 12940 GTCCCTGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 12881 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| ||| |||| || ||||| || |||||||| | | || | ||| ||| Sbjct 12880 TATGTTTTGATAACTGAATCAATATCATCCTTGTGAATTCCAACAGAAACCCTCATTAAC 12821 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || |||||||| | |||||| || | | ||||| ||||| || | || || Sbjct 12820 ATGTGCTGAGGCCTTTCTACAACCTTCCCTTGGACCTTCAATAGGTAAGACCTCTCAAGG 12761 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || ||||||||| || || || || Sbjct 12760 GTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTATCATAGATGAT 12714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685761756753960