Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_027334.1 Length=47800 Score E Sequences producing significant alignments: (Bits) Value seq117873 98.7 3e-16 seq85991 86.0 2e-12 seq69917 82.4 2e-11 >seq117873 Length=518 Score = 98.7 bits (108), Expect = 3e-16 Identities = 303/450 (67%), Gaps = 53/450 (12%) Strand=Plus/Minus Query 33262 CGCCGCGGCCGCGCTCGGAGCTGATCGTCGTCACGCGCTCGATCGCGTCGGCCAGCGCCT 33321 |||| ||||| ||||| || ||| |||| ||||| || | ||| | ||| | | | Sbjct 505 CGCC-CGGCCCCGCTCCGACGAGATGGTCGAGACGCGGTCCACCGCCTTGGCGAAGGTAT 447 Query 33322 CGCGCGGCACG-TC-GGCGGTGATCGG-GTTCGCCTTGGGGATCACCCGCTGATAATCGG 33378 ||||| |||| || |||| | ||| ||| ||| |||||||||||||||||||||| Sbjct 446 CGCGCTCCACGGTCAGGCGCTTGTCGTTGTTAGCC---GGGATCACCCGCTGATAATCGG 390 Query 33379 GGTATGTCCCGTCGATCAGCTTCGATGCCAGCCGAAGGTC-GCCCGCCT-CGAGAACG-A 33435 || | || ||||||||||||||||| |||| ||| | ||| || ||| | || | Sbjct 389 GGAAGGTGCCGTCGATCAGCTTCGAGATCAGC-----GTCAGTCCGTCTGCGA-AGCGTA 336 Query 33436 TGCGGCTCTGGTCAATGGCGACCTG--------GACGGTCTCGCCGGCCTTCGTCGCCTC 33487 |||| ||| | | |||||| | ||| |||||||| ||| |||||| Sbjct 335 GGCGGATCTTGGC--GGGCGACAGGTCGATGCCGACCGTCTCGCC-GCCGTCGTCGAGAA 279 Query 33488 GGCCATCATGCCGAACAGGCTGACCATCTTGCGCGGCACGATGATGCCGGCGAAATCGGG 33547 | | || || || | | ||| ||||||||||||||| | || || ||| | Sbjct 278 G--CTTC-TG--GATCTCGGCCACCGCCTTGCGCGGCACGATCA--CCCCCGGCATCCCG 226 Query 33548 CAGGTTGTC--TCGGGCC----ATGGCCAGCCGGGACAGGCGGTGGCCGTCGGTTGCTAC 33601 | | || | |||| | || | | |||| |||||||| ||||| || || || Sbjct 225 -ACGCTGCCGGCCGGGGCGGGGATCTCGACGCGGGCGAGGCGGTGCCCGTCCGTCGCCAC 167 Query 33602 GGC------GACGAGGGCGCC------TTCGTGCGGGTGCAGGTAGATGCCATTGAGGTA 33649 || ||| | ||||| ||| || ||||||| | ||||| || ||||| Sbjct 166 CGCGCGCAGGACCGGCGCGCCGTCCGATTCCAGCACGTGCAGGAATATGCCGTTCAGGTA 107 Query 33650 GTAGCGGGTTTCCTCGCTGGAGATCGCGAA 33679 |||||| || |||||| ||||||||||||| Sbjct 106 GTAGCGCGTCTCCTCGGTGGAGATCGCGAA 77 >seq85991 Length=916 Score = 86.0 bits (94), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 26799 CGGGTCGCAATCGAGCACCGTGACGGTGGCGCCCTCGGCGGCGAGGGTGGTCGCCAGCAC 26858 ||| ||| ||||| | ||||||| || |||| || |||||| |||||||| || Sbjct 454 CGGATCGGCATCGATGATGGTGACGGACGCTCCCTTGGTGGCGAGTTCGGTCGCCAACAG 513 Query 26859 CAGCGCGGTGGTGCTTTTTCCGGCGCCGCCTTTGGGGTTCGCAATGGCTATGACGGGCAT 26918 |||||| |||| |||||| | ||||| || ||||| |||| ||| ||||||||||| Sbjct 514 AAGCGCGCTGGTCGATTTTCCAGACCCGCCCTTCGGGTTGGCAAAGGCGATGACGGGCAT 573 Query 26919 GG 26920 || Sbjct 574 GG 575 >seq69917 Length=1281 Score = 82.4 bits (90), Expect = 2e-11 Identities = 165/236 (70%), Gaps = 18/236 (8%) Strand=Plus/Plus Query 33258 TTGACGCCGCGGCCGCGCTCGGAGCTGATCGTCGTCACGCGCTCGATCGCGTCGGCCAGC 33317 || ||| |||||||||||||||| |||||||| || || || | ||| | ||| | Sbjct 999 TTCACGGCGCGGCCGCGCTCGGACGAGATCGTCGAGACCCGGTCCACCGCCTTGGCGAAG 1058 Query 33318 GCCTCGCGCGGCACGTCG--GCGGTGATCGG-GTTCGCCTTGGGGATCACCCGCTGATAA 33374 | |||||| ||| | ||| | ||| ||| ||| |||||||||||||| || Sbjct 1059 ACGTCGCGCTCGACGGTGAGGCGCTTGTCGTTGTTGGCC---GGGATCACCCGCTGGTAG 1115 Query 33375 TCGGGGTATGTCCCGTCGATCAGCTTCGATGCCAGCCGAAGGTCGCCCGCCTCGAGAACG 33434 || ||| | || ||||||||||||||||| ||| ||| |||| | ||| | || Sbjct 1116 TCCGGGAAGGTGCCGTCGATCAGCTTCGAGATCAGGGTCAGGCCGCCGG---CGA-AGCG 1171 Query 33435 -ATGCGGCTCT----GGTCAATGG--CGACCTGGACGGTCTCGCCGGCCTTCGTCG 33483 | |||| ||| || | | | ||||| |||||||||||| ||| |||||| Sbjct 1172 CAGGCGGATCTTGGCGGGCGAGAGATCGACCGCGACGGTCTCGCC-GCCGTCGTCG 1226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152595941842916