Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq11270 125 6e-24 >seq11270 Length=18388 Score = 125 bits (138), Expect = 6e-24 Identities = 240/346 (69%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 43942 tttttATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGAT 44001 ||| ||||| || || ||||| || || ||||| || || |||||||||||||| || | Sbjct 5826 TTTCTATGGCTTCCAGATTGCGATCGAGAATATCCACTCTGAAATGTACAGTCTCTTGCT 5767 Query 44002 AGATACGTACATCAAAGA-TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAG 44060 || || || ||||| || | ||| ||||||| | || |||| | ||||| || || | Sbjct 5766 CGAGACCTATATCAAGGACTCGGC-CGAGAAGAACCGGCTGTTCCACGCGATGGAGACCG 5708 Query 44061 TACCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT 44119 | ||| ||| | | || || || |||||||| ||||| | || || Sbjct 5707 TTCCTTGCGTGGCGA-AGAAGGCCGAGTGGGCCCTGCGGTGGATCGACGGCGGAGAATCG 5649 Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTT 44178 || | || | || |||| || || || |||||||||||||| || || | | | Sbjct 5648 TTCGCCGAGAGGCTCATCGCTTTCGCCTGCGTCGAAGGCATTTTCTTCTCCGGTAGCTTC 5589 Query 44179 TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 ||| || ||||||||| |||| || || || || ||||| ||||| || || || || || Sbjct 5588 TGC-GCGATATTTTGGCTAAAAAAGCGCGGGTTAATGCCCGGGTTAACCTTCTCCAACGA 5530 Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 ||| || || || |||||| | || |||||||| || ||| || Sbjct 5529 GTTGATCTCGCGAGACGAAGGCCTCCACTGCGATTTCGCGTGCCTG 5484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396808895551945