Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq11270 125 6e-24
>seq11270
Length=18388
Score = 125 bits (138), Expect = 6e-24
Identities = 240/346 (69%), Gaps = 6/346 (2%)
Strand=Plus/Minus
Query 43942 tttttATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGAT 44001
||| ||||| || || ||||| || || ||||| || || |||||||||||||| || |
Sbjct 5826 TTTCTATGGCTTCCAGATTGCGATCGAGAATATCCACTCTGAAATGTACAGTCTCTTGCT 5767
Query 44002 AGATACGTACATCAAAGA-TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAG 44060
|| || || ||||| || | ||| ||||||| | || |||| | ||||| || || |
Sbjct 5766 CGAGACCTATATCAAGGACTCGGC-CGAGAAGAACCGGCTGTTCCACGCGATGGAGACCG 5708
Query 44061 TACCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT 44119
| ||| ||| | | || || || |||||||| ||||| | || ||
Sbjct 5707 TTCCTTGCGTGGCGA-AGAAGGCCGAGTGGGCCCTGCGGTGGATCGACGGCGGAGAATCG 5649
Query 44120 TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTT 44178
|| | || | || |||| || || || |||||||||||||| || || | | |
Sbjct 5648 TTCGCCGAGAGGCTCATCGCTTTCGCCTGCGTCGAAGGCATTTTCTTCTCCGGTAGCTTC 5589
Query 44179 TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238
||| || ||||||||| |||| || || || || ||||| ||||| || || || || ||
Sbjct 5588 TGC-GCGATATTTTGGCTAAAAAAGCGCGGGTTAATGCCCGGGTTAACCTTCTCCAACGA 5530
Query 44239 GTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
||| || || || |||||| | || |||||||| || ||| ||
Sbjct 5529 GTTGATCTCGCGAGACGAAGGCCTCCACTGCGATTTCGCGTGCCTG 5484
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396808895551945
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |