Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq57685 273 3e-68 seq78534 113 6e-20 seq99200 96.9 4e-15 seq64904 87.8 2e-12 seq588 87.8 2e-12 >seq57685 Length=1792 Score = 273 bits (302), Expect = 3e-68 Identities = 1120/1742 (64%), Gaps = 39/1742 (2%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 |||||||||||||| || ||||||||||| ||||||| | | |||||| |||| | Sbjct 67 CGGAGATAGTACATGCCAGTCTTGAGTCCGAGTTTCCAACCAGCGAAATGCATTGAAGTG 126 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482 | |||| ||| || || | |||| | ||| | ||| ||| || || ||| Sbjct 127 ATCTTGCCCATGGTCGGCTCCTTCATGTGAATGTTGAGCGACTGAGATTGATCGATAAAG 186 Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGA 110542 || || | || ||||| | || || | | | || ||||| || || Sbjct 187 GCACCACGATCGGCAGCCATCTGAACGATTTGTCGCTGGCTGATCTCCCAGACAGTCTTG 246 Query 110543 TAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTC 110602 |||||| ||||| ||||| || || | | ||| ||| ||||| || | | Sbjct 247 TAGAGAGCCTTGAGGTCATCGGGAATGTTAGGGATGCGCTGAATGGATCCGCTGTCGGCG 306 Query 110603 ACCATGAGATCCTTCATATCCTTGGACCAGAGACCA--ATCTTCTTGAGGTCATTGACGA 110660 | ||| ||| |||||| | | |||||||||||| ||| | ||| || |||| | Sbjct 307 ATGATGCGATTCTTCATGTTGTCAGACCAGAGACCACGATCAAC--GAGATCCTTGAGAA 364 Query 110661 GGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTG 110720 | |||||| | ||||| || || | | | | ||| ||||| | | Sbjct 365 GCCAAGGGTTGACGACCTGGAACTCGCCGGCCAAGACACGACGAGAGTAAATGTTGGAAG 424 Query 110721 TGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTG 110780 ||||||| || ||||| || || |||| ||| || | || ||||| || ||||| | Sbjct 425 TGTATGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGATGTCGAGGCAGTCGGCATAG 484 Query 110781 GTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCC 110840 |||| | | |||| || || | || | || ||| |||||||| | | || Sbjct 485 GTGCGACAAGAAGAGAATTTCGGACGCCGTGGTCAGCGATCTTAGCCTTGAGAGCGTTCC 544 Query 110841 AGTCGTAGTTG--AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGA 110898 |||| || | || | || |||| |||||||||| | |||||| | ||||| || Sbjct 545 AGTCCCAGAGGTCAG-TGGGAGTCACAC-CCCACATGTCGTATTGAAGCTCGCCTTGCGA 602 Query 110899 CGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGC 110958 | ||||| ||||| |||| || || | ||| | ||| ||||| || || || Sbjct 603 AACAGGAGAGCCCTCGTAGGTCTCGTAAGGACCAAGTTCTTTGGCCAAATCGCACGAGGC 662 Query 110959 CTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATC 111018 || | ||||| || ||||| || ||||| | || | | || || Sbjct 663 AGTGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGTTGACGAGCCTCTGG 722 Query 111019 TGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACCTTGAACACCCAAAC 111077 || || |||| ||| || | | ||| |||||||||||||||| ||||| | || Sbjct 723 AGAGTCGAATGGCATGCG-CAGAGCCAAGAATGCATCCGCGAGACCTTGCACACCAAGAC 781 Query 111078 CAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTC 111134 | ||||| | ||| |||||||| ||||| || || |||| || ||||| ||| Sbjct 782 CGATAGGGCGGTGACGCATATTGGACTTGCGAGC---CTCAGGCACTGGATAGTGATTGA 838 Query 111135 TGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCAT 111194 ||| |||| ||| || || ||| || | || || |||||| || |||| Sbjct 839 TGTTGATGATCTTGTTCAGGTTCTTGACGACGACCTGAACGACTTCATGGAGCTTTTGGA 898 Query 111195 AATCAAAAGTGCGAGTCTCTTCATT--GACATACTTTGGAAGGGCGATTGATGCCAAATT 111252 | || |||| | || | ||| |||||| | ||||| || | || ||||| || Sbjct 899 AGTCGAAAGA-CTCGT-TGGCCATGTCGACATAGGTAGGAAGTGCCAGAGAAGCCAAGTT 956 Query 111253 GCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACT 111312 ||||||||| |||||| | | || ||||| | || ||||| || | ||||| || Sbjct 957 GCAAACAGCAACCTCATCAGGAGCAGTATACTCAATGATCTCTGTGCAGAGATTGGAGCT 1016 Query 111313 CTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCAT 111372 ||| || | ||||| || || || || |||||| ||||| ||||||||||| Sbjct 1017 GCGAATGACACCGAGGTTCTTCTGATTGCTTTTGCGGTTGCAAGCATCTTTGTAGAGCAT 1076 Query 111373 GTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTG 111431 | | || | || ||||| ||||| | | ||| || || | ||| | | || | || Sbjct 1077 GAAAGGATTGCCAGTCTCTGTCTGAGCCTCGAGGATGGCGTACCATAGCTTCTG-TGCGC 1135 Query 111432 GTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 111491 | || | | | || |||||| ||||||||| ||||||| || || ||||| | Sbjct 1136 GAACGGTCTCACGACCACGACCCTCCTTCTCGTACTTGTTGTAGAGAGCCTCGAACTCAT 1195 Query 111492 CACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCAC 111551 | || |||| | ||||| || || || || || | || | ||| | ||| Sbjct 1196 CGCCATAGACGTCAGCAAGACCAGGGCACTCGTTCGGGCACATCAGCGTCCAATCTCCAT 1255 Query 111552 CTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA- 111610 | ||| || |||||||||||||| || |||||||| || | | ||||| || | | Sbjct 1256 TCTGCTCGACACGCTTCATGAAAAGATCGGGAATCCAGAGTGCATAGAAGAGGTCACGAG 1315 Query 111611 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 111670 ||| || |||| || | || ||||| || | || ||||| | | || ||| ||| Sbjct 1316 CACGGA-CCTCCTCCTTGCCGTGGTTCTTGCGAAGATCCAGGAAGGCGAAGACATCAGCG 1374 Query 111671 TGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTT 111724 ||||||||||| || || | || | | || ||||| ||| |||| | Sbjct 1375 TGCCATGGCTCGAGGTACATGGCAAAGGCGCC---GGGACGCTTGTTGCCACCTTGGTCG 1431 Query 111725 ACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCA 111784 ||||| || || || ||| || || ||||||||||| | | ||||| ||| ||| Sbjct 1432 ACATAACGAGCAGTATTGTTGAAGACACGAAGCATTGGTACCAGACCATTGGATGTGCCA 1491 Query 111785 TTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 111844 || || || | ||| || | | || | | || | || | ||| || || Sbjct 1492 TTGGTGCCGCCAATGTACGAACCAGTCGCACGGATGCGGTGAACGTTGAACCCGATGCCG 1551 Query 111845 CCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTG 111902 ||||| ||| ||||| ||||| || | | || || | |||||||| | ||| Sbjct 1552 CCAGCATTCTTCGAGATCATTGCG--CAGGTCTTGAGTGTATCGTAGATACCCTCGATGC 1609 Query 111903 AGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCAT 111962 |||||||||| | |||| |||||||| || || ||| || | || ||||||||| Sbjct 1610 TGTCCTCCTTGACGTCGATGAGGAAGCAGGAGGCCAGCTGTGGGTTGGGAGTACCAGCAC 1669 Query 111963 TGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCC 112021 ||||||| || || | ||||| |||| ||| | | ||||| | || ||| ||||| Sbjct 1670 TGAAGAGTGTCGGCGAAGCGTGCGTGAA-GTACTTGTTTGACATGTAGTTGTAGGTCTCG 1728 Query 112022 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGT 112081 | | ||| || || || || || || ||||| | ||||| ||||||| ||| | ||| Sbjct 1729 ATGGCAGCCTCGATATCCTCGCCATGAATGCCAACGGCGACACGCATGATCATCTGCTGA 1788 Query 112082 GG 112083 || Sbjct 1789 GG 1790 >seq78534 Length=1057 Score = 113 bits (124), Expect = 6e-20 Identities = 322/485 (66%), Gaps = 14/485 (3%) Strand=Plus/Minus Query 111218 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 111277 |||||| | ||| || | || || || | ||||||||| || ||||| | | Sbjct 675 TTGACAAATGCTGGCAGTGAGACAGACGCGAGATTGCAAACTGCGACTTCATCTGGAGCA 616 Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 || ||||| | ||||| || || | |||||| ||| ||||| |||| ||||||||| Sbjct 615 GTATACTCAATGATTTCGGTGCAGAGGTTGGATGACTTGATCGTTCCCAGGTTCTTTTGG 556 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || ||||| |||||| ||||| ||||| |||||| | || | || ||||| ||||| Sbjct 555 TTGCTCTTGCGGTTGCAGGCATCTTTGTACAGCATGAATGGATTGCCAGTCTCAGTCTGA 496 Query 111398 GATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGC-GTTGGCCCGTCCCT 111455 | | | || || | ||| | || | | || || | || | | ||||| | ||| Sbjct 495 GCCTCAATGATGGCATACCACAGTTTCTGAGCCT--TA-ATTGTCTGGCGGCCCTTTCCT 439 Query 111456 -CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCT 111514 || ||| || || ||| | | ||| || || || || || ||| || | ||| Sbjct 438 GCCTTCTCATATTTGGTGAACAAGGCCTCGAATTCGTCGCCGTAGCAGTCAGACAAACCA 379 Query 111515 GG---TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATG 111571 || | | ||| ||||| | || | ||| | || | || || ||||||||| Sbjct 378 GGACATTCATTG---GGACACATCAGTGTCCAGTCTGCATTCTTTTCTACTCGCTTCATG 322 Query 111572 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT-ACACCGAGCCTCTTCGTCACC 111630 || ||||| |||||||| || | | ||||||||||| | | || | ||||| | || Sbjct 321 AATAGGTCAGGAATCCAGAGAGCGTAGAAGAGATCTCTGGCTCTGA-CTTCTTCTTTGCC 263 Query 111631 TTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGAC 111690 ||||| || || | || |||| | | ||| ||||||||||||||||| || | Sbjct 262 GTGGTTCTTTCTCAAGTTGAGCCACTCGAATACATCAGCGTGCCATGGCTCAAGGTAAAT 203 Query 111691 TGCGA 111695 |||| Sbjct 202 GGCGA 198 >seq99200 Length=725 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/242 (69%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| | ||| ||||| || || || || || || ||||| ||||| ||||||||||| Sbjct 228 GTGCATACCTTCATCACGAGAGATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACC 287 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 | |||||| | ||| |||| | | ||| ||||||||||||||||| ||||| || Sbjct 288 TCTCTTCTTGAGCCAGAAAATGGAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGC 347 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || || | || |||| |||||| || ||| || | |||| ||| || Sbjct 348 GGCGAATGCCACCAGACGTTGGGCGAAACTGCTTTCCTTATCAGAGATCCATCTCAACGC 407 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATA---ACTGCTT 122906 ||| | |||||||| || ||||| | ||| | ||| || || || | |||| || Sbjct 408 CCACTCAGCCTTCTTGCGGATGCATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTT 467 Query 122907 CT 122908 || Sbjct 468 CT 469 >seq64904 Length=1455 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 164603 GTATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGC 164662 ||||||||| | |||||| |||| ||||||||| || ||| | || | ||||| Sbjct 802 GTATGGTCGCATCGCACCAAGATCAGGTCTCGCTTCCAAACATTTTCTTGATACAGGTGC 861 Query 164663 GGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAA 164713 |||||| || ||| | ||||||| ||||||||||||||| |||| ||||| Sbjct 862 GGGTGTCATAGATGCTGACTATAGAGGTGAAGTCAAAGTGCTTCTTTTCAA 912 >seq588 Length=109198 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || || ||||| || |||||||| || || || | || ||| ||||| | || Sbjct 12952 TGAGGCCTAGGTGTCCCTGCATTGAAAAGAGTGGGAGAAGCATGAGTGAACCACCGCTGA 12893 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | | |||||| | | || |||||||| || ||| ||| || || | | Sbjct 12892 GACATCATATGGTATGTTTTGATAACTGAATCAATATCATCCTTGTGAATTCCAACAGAA 12833 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 |||| ||| ||||||| ||| || |||| | | | || | || || | | || || Sbjct 12832 ACCCTCATTAACATGTGCTGAGGCCTTTCTACAACCTTCCCTTGGA-CCTTCAATAGGTA 12774 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | ||||||||||||||| |||||||||| || | ||| |||| Sbjct 12773 AGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 12729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626983272914400