Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq57685 279 6e-70 seq38440 116 5e-21 seq39070 102 1e-16 seq99200 91.5 2e-13 seq2373 86.0 8e-12 >seq57685 Length=1792 Score = 279 bits (308), Expect = 6e-70 Identities = 1120/1735 (65%), Gaps = 43/1735 (2%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||| |||||||| || |||||||| || | ||||| || | ||||||||| | Sbjct 67 CGGAGATAGTACATGCCAGTCTTGAGTCCGAGTTTCCAACCAGCGAAATGCATTGAAGTG 126 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | ||| || | |||| | ||| | || ||||||||||| ||| Sbjct 127 ATCTTGCCCATGGTCGGCTCCTTCATGTGAATGTTGAGCGACTGAGATTGATCGATAAAG 186 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTG 118016 || ||||| || ||||| | || | | | |||| ||||| |||||| || Sbjct 187 GCACCACGATCGGCAGCCATCTGAACGATTTGTCGCTGGCTGATCTCCCAGACAGTCTTG 246 Query 118017 TAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTG 118076 ||||| ||| | ||||| || || | ||| || |||||||| | | | Sbjct 247 TAGAGAGCCTTGAGGTCATCGGGAATGTTAGGGATGCGCTGAATGGATCCGCTGTCGGCG 306 Query 118077 ACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGA 118136 | ||| ||| |||||| | | |||||||||||| | |||||||| |||| Sbjct 307 ATGATGCGATTCTTCATGTTGTCAGACCAGAGACCACGATCAACGAGATCCTT---GAGA 363 Query 118137 TGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGT 118192 || | ||||| || ||||| || || | | || | ||| || || |||| Sbjct 364 AGCCAAGGGTTGACGACCTGGAACTCGCCGGCCAAGACACGACG-AGAGTAAATGTTGGA 422 Query 118193 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 118252 ||||||||||| |||||||| ||| |||| ||| || | ||| ||||| || ||||| Sbjct 423 AGTGTATGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGATGTCGAGGCAGTCGGCAT 482 Query 118253 GGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTC 118312 ||||| | ||||| || |||| || | || || |||||||||||| Sbjct 483 AGGTGCGACAAGAAGAGAATTTCGGACGCCGTGGTCAGCGATCTTAGCCTTGAGAGCGTT 542 Query 118313 CCAGTCGTAGTTG--AGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 118370 |||||| || | || | | || | | |||||| || | || || ||||| Sbjct 543 CCAGTCCCAGAGGTCAG-TGGGAGTCACACC-CCACATGTCGTATTGAAGCTCGCCTTGC 600 Query 118371 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 118430 || | || || ||||| | ||||| || || || | | ||||| ||| | Sbjct 601 GAAACAGGAGAGCCCTCGTAGGTCTCGTAAGGACCAAGTTCTTTGGCCAAATCGCACGAG 660 Query 118431 GCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTC 118489 || ||| || ||||| || || || || || || | || | ||| | | |||| Sbjct 661 GCAGTGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGTTGACGAG-CCTC 719 Query 118490 GTCGGAATCAAACGCGAGTCGGCACAAAATA-AATACATCCGCGAGACCTTGGACACCGA 118548 || || || | | || || | | ||| |||||||||||||||| ||||| | Sbjct 720 TGGAGAGTCGAATGGCATGCG-CAGAGCCAAGAATGCATCCGCGAGACCTTGCACACCAA 778 Query 118549 GGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAAT 118605 | || || ||||| || | |||||| ||||| ||||| ||| ||| ||||| || Sbjct 779 GACCGATAGGGCGGTGACGCATATTGGACTTGCGAGC---CTCAGGCACTGGATAGTGAT 835 Query 118606 TCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTT 118665 | | | ||| | | | || || || ||| ||| |||| || |||||| ||||||| Sbjct 836 TGATGTTGATGATCTTGTTCAGGTTCTTGACGACGACCTGAACGACTTCATGGAGCTTTT 895 Query 118666 CGTAATCAAAACTGCGAGTC--TCTTCA--TTGACATACTTAGGAAGGGCGATTGACGCC 118721 | | || ||| || || | || | |||||| ||||||| || | || ||| Sbjct 896 GGAAGTCGAAA----GACTCGTTGGCCATGTCGACATAGGTAGGAAGTGCCAGAGAAGCC 951 Query 118722 AGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTT 118781 | || || |||| |||||| | |||| ||||| || || || ||||| | || Sbjct 952 AAGTTGCAAACAGCAACCTCATCAGGAGCAGTATACTCAATGATCTCTGTGCAGAGATTG 1011 Query 118782 GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG-TGTTACACGCATCCTTGTA 118840 || || |||| || | |||||| ||| ||| |||| ||| || ||||| ||||| Sbjct 1012 GAGCTGCGAATGACACCGAGGTTCTTCTGA-TTGCTTTTGCGGTTGCAAGCATCTTTGTA 1070 Query 118841 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGG 118899 |||||| | || | || ||||| || || | || ||| || || | ||| | | || | Sbjct 1071 GAGCATGAAAGGATTGCCAGTCTCTGTCTGAGCCTCGAGGATGGCGTACCATAGCTTCTG 1130 Query 118900 CAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAA 118959 || | || || | | || ||||| | ||||||||| ||||||| || || | Sbjct 1131 -TGCGCGAACGGTCTCACGACCACGACCCTCCTTCTCGTACTTGTTGTAGAGAGCCTCGA 1189 Query 118960 ACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATT 119019 |||| || || | | || | || || || || | ||||| | || | ||| | Sbjct 1190 ACTCATCGCCATAGACGTCAGCAAGACCAGGGCACTCGTTCGGGCACATCAGCGTCCAAT 1249 Query 119020 GACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGAT 119079 ||| || ||| || ||||||||||| || || || |||||||| || ||||||| | Sbjct 1250 CTCCATTCTGCTCGACACGCTTCATGAAAAGATCGGGAATCCAGAGTGCATAGAAGAGGT 1309 Query 119080 CCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATAT 119139 | ||| || | || || | || || || || | |||| ||| | | || || Sbjct 1310 CACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCCAGGAAGGCGAAGACAT 1369 Query 119140 CCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGT 119196 | |||||||| || || ||||||| || | | || ||| ||| | |||| Sbjct 1370 CAGCGTGCCATGGCTCGAGGTACATGGCAAAGGCGCCGGGACGCTTGTTGCCACCTTGGT 1429 Query 119197 TTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGC 119256 ||||| | ||||| ||| || |||||||||||||| | | ||||| |||| || Sbjct 1430 CGACATAACGAGCAGTATTGTTGAAGACACGAAGCATTGGTACCAGACCATTGGATGTGC 1489 Query 119257 CATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAAT 119314 |||| || || | || ||||| || | | || | || ||| | || | || || Sbjct 1490 CATTGGTGCCGCCAATGTACGA-AC-CAGTCGCACGGATGCGGTGAACGTTGAACCCGAT 1547 Query 119315 ACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGAT 119374 || || || ||| ||||| ||||| | |||| | ||||||| || ||||| Sbjct 1548 GCCGCCAGCATTCTTCGAGATCATTGCGCAGGTCTTGAGTGTATCGTAGATACCCTCGAT 1607 Query 119375 CGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGC 119434 ||| |||| |||||||||||||| | || || || |||| |||||||| Sbjct 1608 GCTGTCCTCCTTGACGTCGATGAGGAAGCAGGAGGCCAGCTGTGGGTTGGGAGTACCAGC 1667 Query 119435 GTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCT 119493 ||||||| || || | ||||| |||| ||| | | ||||| | || |||||||| Sbjct 1668 ACTGAAGAGTGTCGGCGAAGCGTGCGTGAA-GTACTTGTTTGACATGTAGTTGTAGGTCT 1726 Query 119494 CCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548 | | | | || || || || || ||||| || | | ||| ||||| | ||| Sbjct 1727 CGATGGCAGCCTCGATATCCTCGCCATGAATGCCAACGGCGACACGCATGATCAT 1781 >seq38440 Length=2260 Score = 116 bits (128), Expect = 5e-21 Identities = 399/607 (66%), Gaps = 19/607 (3%) Strand=Plus/Plus Query 13863 TCGTGATCGTTCCG-TCGCCGTCACGGACAGCGCGGATGGCACACTCATTGAGGAGGTTC 13921 |||||| || | || | |||| |||| | ||| | | ||| | || |||| ||||||| Sbjct 936 TCGTGA-CGATGCGCTTGCCGCGACGGGCGGCGAGCAGGGCCGATTCGTTGACGAGGTTC 994 Query 13922 GCCAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCG 13981 || |||||| || |||||||| | || |||||| | | || | ||||| Sbjct 995 ATCAGGTCGGCGCCCGAGAAGCCGGGGGTGCCGCGGGCGATGACCTTGAGGTCGACATCC 1054 Query 13982 TCAGCCAACTTCTTGTCTCGGGCGTGGACACCCAAAATCTTCTCGCGACCGCGCACA-CT 14040 |||| | | | ||| ||||||| | || || |||||| ||| || | Sbjct 1055 GGCGCCAGCGGCACCTTGCGGACGTGGACCCGCAGGATGCGCTCGCGGCCGGTGACGTCC 1114 Query 14041 GGGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGG-CGGAGGAGGGCGTCGTCAA 14099 |||| || ||| |||||| || || || || || ||| || || || ||| ||| | Sbjct 1115 GGGTTCGG-CACCATGATCTGGCGGTCGAACCGGCCCGGGACGCAGCAGCGCGGGGTCGA 1173 Query 14100 GGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTT---ATCAAAGC 14156 | | || |||||| ||||||||||||| | || ||| |||||| || || | Sbjct 1174 GCACGTCGGGGCGGTTGGTCGCCGCGATGATGATGACGCC---CTCGTTGGCCTCGAACC 1230 Query 14157 CATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCAGGCAT 14214 | |||||||| | ||| || || | ||| || ||||| || || || ||| | | Sbjct 1231 CGTCCATCTCCACGAGGAGCTGGTTCAGGGTCTGCTCGCGCTCGTCGTTGCCGCCGCC-- 1288 Query 14215 ACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGG 14274 || || | ||| || ||||| ||||| || || |||||||| | ||| || || Sbjct 1289 GAGGCCGGCGCCGCGATGGCGGCCGACCGCGTCGATCTCGTCGATGAAGATGATGCAGGG 1348 Query 14275 -TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAA 14333 | | ||| || | | || || || || ||||| | |||| ||||| ||||| | Sbjct 1349 CGCGTTCTTCTTGGCCTGC-TCGAACATGTCGCGCACGCGGCTGGCGCCGACGCCCACGA 1407 Query 14334 ACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCG 14392 ||||||| || || | | | | | | || | || ||| || ||||| | || |||||| Sbjct 1408 ACATCTCGACGAAGTCCGAGCCCG-AGATGGTGAAGAACGGCACGTTGGCCTCGCCCGCG 1466 Query 14393 ATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGT 14452 | || ||||||| |||||||| || || || || || |||| || | || || Sbjct 1467 ACCGCCCGGGCGATCAGGGTCTTACCGGTGCCGGGCGGGCCGACGAGCAGCACGCCGCGC 1526 Query 14453 GGGATCC 14459 ||||||| Sbjct 1527 GGGATCC 1533 >seq39070 Length=2288 Score = 102 bits (112), Expect = 1e-16 Identities = 347/528 (66%), Gaps = 12/528 (2%) Strand=Plus/Plus Query 13906 CTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCGATGGC 13965 ||| ||||||| ||| |||| ||||||||| | |||||||| ||| | |||| | Sbjct 659 CTCGTTGAGGACGTTGGCCAGGTCGGCACCGGTGAAGCCCGGCGTGCGACGGGCGACCGA 718 Query 13966 GTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCGGGCGTGGACACCCAAAATCTTCTC 14025 | || | || || || | | |||| | | |||||||| | |||| | Sbjct 719 CTCGAGGTCGACGTCCGGGGCGACCGGCTTGCCCTGCGCGTGGACCTTGAGGATCTGCAG 778 Query 14026 GCGACCGCGCACA-CTGGGTAGG-GACACGGTGATCTTACGATCAAAGCGACCTGGGCGG 14083 ||| || || | |||| | ||| ||| ||||| || || ||||| || ||||| Sbjct 779 GCGGCCCTTCATGTCCGGGTTGTCGAC-CGG-GATCTGGCGGTCGAAGCGGCCCGGGCGC 836 Query 14084 AGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTC 14143 || |||||| ||| |||| || ||||||||||| ||||||| | || | ||| | Sbjct 837 AGCAGGGCGGGGTCGAGGACGTCGGGACGGTTCGTCGCGGCGATGAGGATGACG-CCGCC 895 Query 14144 TC-GTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATC 14202 | | || ||||| |||||||| | ||| || || | || || ||||| || || Sbjct 896 GCGGGCGTCGAAGCCGTCCATCTCGACGAGGAGCTGGTTCAGCGTCTGCTCGCGCTCGTC 955 Query 14203 ATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATG 14260 | || || | | || || | ||| || |||||||||||| || || |||||| Sbjct 956 GT--GCCCGCCGCCGATGCCGGCGCCGCGGTGGCGACCGACGGCGTCGATCTCGTCGATG 1013 Query 14261 AAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCA 14320 || ||||| || || || ||| || |||| || || || | | ||| Sbjct 1014 AAGACGATGGCCGGGGAGTTCTCCTTGGCCTGCTCGAAGAGGTCACGGACGCGGCTCGCA 1073 Query 14321 CCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTT 14379 |||||||| || |||||||| || || | || ||| | || | | ||| || ||| Sbjct 1074 CCGACACCGACGAACATCTCGACGAAGTCGGACCCGG-AGATCGAGTAGAACGGCACGCC 1132 Query 14380 AGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | ||| || |||| ||| || ||||| |||||||| || || || || Sbjct 1133 CGCTTCGCCGGCGACGGCACGTGCGAGCAGGGTCTTGCCGGTGCCGGG 1180 >seq99200 Length=725 Score = 91.5 bits (100), Expect = 2e-13 Identities = 189/278 (68%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| | ||| || ||||| ||||| || || || ||||| |||||| ||||||||||| Sbjct 228 GTGCATACCTTCATCACGAGAGATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACC 287 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 | |||||| | ||||||||| | || || || ||||||||||| ||||| || Sbjct 288 TCTCTTCTTGAGCCAGAAAATGGAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGC 347 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA---AACCACTTCAT 130203 ||||| || | ||||| | || || || || ||||| | ||| ||| Sbjct 348 GGCGAATGCCACCAGACGTTGGGCGAAACTGCTTTCCT---TATCAGAGATCCATCTCAA 404 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 |||||||| ||||| || ||| || || | || | ||| || || ||||| | || Sbjct 405 CGCCCACTCAGCCTTCTTGCGGATGCATGGAATAGTGTCGATAGCATCGAAGAGGTACT- 463 Query 130264 CTTTTCTG--ATGGATCTTTGATGTACTTATCTATGAG 130299 |||||| ||| ||||| | | |||| ||||| Sbjct 464 -GTTTCTGCTTTGGCTCTTTCACAAATGTATCAATGAG 500 >seq2373 Length=61655 Score = 86.0 bits (94), Expect = 8e-12 Identities = 189/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||| |||||||| ||||| || ||||| || | ||||||||| || Sbjct 23220 AAATCCATCCATCTCTGTCAAGAGCTGATTAATAGTTTGCTCCCTCTCATCATTCCCA-- 23277 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | | | || || | | ||| | || || || ||||| ||||| || || || || Sbjct 23278 CCTCCAAGCCCTGCCCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATAAACACAATG 23337 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || || ||| || || || || | || | ||||||| ||| || || || Sbjct 23338 CA-GGGTGCTTTCGACTTTGCCTTCTCGAACAAGTCCCTCACTCTCGAGGCCCCAACTCC 23396 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 |||||||| |||||||| | | || | ||| || || || ||| | ||| || Sbjct 23397 CACAAACAATTCCACAAACTCCGAAGCAGCACAAGAGAAAAACGGCACGCCGGCTTCTCC 23456 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | |||| || | ||||||||||| || || || Sbjct 23457 GGCCACTGCTCTAGCCAATAGGGTCTTCCCTGTACCGGG 23495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617402498250840