Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq57685 325 5e-84 seq1930 136 5e-27 seq99200 114 2e-20 seq11270 104 3e-17 seq35533 100 3e-16 seq2373 93.3 5e-14 seq588 86.0 7e-12 >seq57685 Length=1792 Score = 325 bits (360), Expect = 5e-84 Identities = 921/1395 (66%), Gaps = 35/1395 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| | ||| ||||||| || ||| | || |||||||| || || || || ||| | Sbjct 1790 CCTCAGCAGATGATCATGCGTGTCGCCGTTGGCATTCATGGCGAGGATATCGAGGCTGCC 1731 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || | ||||| | | ||| |||| ||||| | || || ||||| Sbjct 1730 ATCGAGACCTACAACTACATGTCAAACAAGTAC-TTCACGCACGCTTCGCCGACACTCTT 1672 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 || ||||||||| || | || || || || |||||||| |||| | ||||||||| Sbjct 1671 CAGTGCTGGTACTCCCAACCCACAGCTGGCCTCCTGCTTCCTCATCGACGTCAAGGAGGA 1612 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGCT 104458 | ||| | |||||||| | || || | | || ||||| ||||| ||| ||| Sbjct 1611 CAGCATCGAGGGTATCTACGATACACTCAAGACCTG--CGCAATGATCTCGAAGAATGCT 1554 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 104518 || || || ||| | || | || | | || | | || ||| | || || Sbjct 1553 GGCGGCATCGGGTTCAACGTTCACCGCATCCGTGCGACTGGTTCGTACATTGGCGGCACC 1494 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 ||||| ||| ||||| | | ||||||||||| || || ||| || || || ||| Sbjct 1493 AATGGCACATCCAATGGTCTGGTACCAATGCTTCGTGTCTTCAACAATACTGCTCGTTAT 1434 Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || | |||| ||| ||||| || | | || | || || ||||||||| Sbjct 1433 GTCGACCAAGGTGGCAACAAGCGTCCC---GGCGCCTTTGCCATGTACCTCGAGCCATGG 1377 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 ||||| ||| || | | ||||| || | || ||||| || | ||||||| || Sbjct 1376 CACGCTGATGTCTTCGCCTTCCTGGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCCG- 1318 Query 104693 TGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 ||| || || ||||||| || ||||||||||| ||||| ||||||||| | || ||| | Sbjct 1317 TGCTCGTGACCTCTTCTATGCACTCTGGATTCCCGATCTTTTCATGAAGCGTGTCGAGCA 1258 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || ||| ||||| | || | || || || || |||||||| | || | | || Sbjct 1257 GAATGGAGATTGGACGCTGATGTGCCCGAACGAGTGCCCTGGTCTTGCTGACGTCTATGG 1198 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT 104871 || ||||| || || || |||| ||||||||| | || ||||| | || ||| || Sbjct 1197 CGATGAGTTCGAGGCTCTCTACAACAAGTACGAGAAGGAGGGTCGTGGTCGTGAGACCGT 1138 Query 104872 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930 | || | || | | ||| | || || ||| || |||| || |||||||| | || | Sbjct 1137 TCGCGC-ACAGAAGCTATGGTACGCCATCCTCGAGGCTCAGACAGAGACTGGCAATCCTT 1079 Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 |||||| |||||||| || || |||| || || ||||| ||||| | ||||| || Sbjct 1078 TCATGCTCTACAAAGATGCTTGCAACCGCAAAAGCAATCAGAAGAACCTCGGTGTCATTC 1019 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 || ||||||||||| ||||| ||| | || | ||| | |||||| ||||| | Sbjct 1018 GCAGCTCCAATCTCTGCACAGAGATCATTGAGTATACTGCTCCTGATGAGGTTGCTGTTT 959 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA--AGACATTTGA 105108 | ||| | || || | || || || | ||||| || || | ||| || | || || Sbjct 958 GCAACTTGGCTTCTCTGGCACTTCCTACCTATGTCGA--CATGGCCAACGAGTCTTTCGA 901 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 | |||| ||||| ||||| | ||| ||| ||||| |||| | || | Sbjct 900 CTTCCAAAAGCTCCATGAAGTCGTTCAGGTCGTCGTCAAGAACCTGAACAAGATCATCAA 841 Query 105169 TAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 105225 | ||| || || || |||| ||||| || || |||||| | ||||| || || Sbjct 840 CATCAATCACTATCCAGTGCCTGAG---GCTCGCAAGTCCAATATGCGTCACCGCCCTAT 784 Query 105226 TGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATT 105284 ||||| ||||| || ||||||||||||| |||| | || || ||| |||| || | Sbjct 783 CGGTCTTGGTGTGCAAGGTCTCGCGGATGCATTCTTGGCTCTG-CGCATGCCATTCGACT 725 Query 105285 CCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTG 105344 | || || || |||| | || || |||||||| || ||||| ||||| Sbjct 724 CTCCAGAGGCTCGTCAACTCAACATCCAGATCTTCGAGACCATCTACCACGCTGCTCTCA 665 Query 105345 AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404 || | || ||||| | | |||||| || || |||| ||||| ||||| | Sbjct 664 CTGCCTCGTGCGATTTGGCCAAAGAACTTGGTCCTTACGAGACCTACGAGGGCTCTCCTG 605 Query 105405 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGA 105462 ||| ||||| | |||||||| || ||||||| |||| || | || | || || Sbjct 604 TTTCGCAAGGCGAGCTTCAATACGACATGTGGG-GTGTGACTCCCA-CTGACCTCTGGGA 547 Query 105463 CTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 |||| | |||||||||| ||| || | || | || || ||| || | || Sbjct 546 CTGGAACGCTCTCAAGGCTAAGATCGCTGACCACGGCGTCCGAAATTCTCTTCTTGTCGC 487 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 || ||||| || ||||| || | || ||| |||| || || ||||| || || || Sbjct 486 ACCTATGCCGACTGCCTCGACATCGCAGATCATGGGCTTCAACGAGTGCTTCGAGCCATA 427 Query 105583 CACGACGAACATCTA 105597 ||| | ||||| || Sbjct 426 CACTTCCAACATTTA 412 >seq1930 Length=68304 Score = 136 bits (150), Expect = 5e-27 Identities = 283/415 (68%), Gaps = 10/415 (2%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 || || || ||| | | || || || || || |||| || || || | | |||||| Sbjct 60272 TCGAGAATGTCAGCCCTGTTGGTTGCTGCAATCACAATGATGCCAGTGTTACCTTCAAAA 60213 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||||||| ||||||| || ||||| | |||||||||| || | Sbjct 60212 CCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTCCCT---CCA 60156 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| |||| | | |||| ||| || |||||||| ||||||| || || ||||| Sbjct 60155 CCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCAA 60096 Query 9734 GGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||| || | | ||| ||| ||||| || || || ||| || |||||||| Sbjct 60095 GGAGCATTCTCCTTTGCCTTCTTGAAA-AGATCACGGACTCGAGAGGCACCAACACCAAC 60037 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 |||||||| ||||| | || | | | || | || || || ||| || |||||| | Sbjct 60036 GAACATCTCAACAAACTCTGAACCTG-AGATAGAGAAAAACGGAACACCAGCTTCACCAG 59978 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 |||| || ||| || |||||||| || || || || ||| || || | ||| Sbjct 59977 CAATTGCCTTGGCTAGCAGAGTCTTCCCAGTTCCAGGAGGACCGATAAGAAGAACCCCTT 59918 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 |||||| || ||| || || | | || ||||| | ||| ||||| ||||| Sbjct 59917 TTGGAATGCGAGCCCCAATTGCAGTGAACCTTTCAGGCTTCTTCAGAAACTCCAC 59863 >seq99200 Length=725 Score = 114 bits (126), Expect = 2e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 |||||||| ||||||||||| || || ||| | | |||| |||||||||||| ||||| Sbjct 344 GTTGAGGGCATCTTCTTCTCCGGGTCTTTCGCCTCCATTTTCTGGCTCAAGAAGAGAGGT 285 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAA 94947 |||||||| ||||| |||||||||||||| ||||||||||| || || | ||| | Sbjct 284 CTCATGCCTGGTCTGACATTCTCCAACGAGCTGATCTCTCGTGATGAAGGTATGCACACA 225 Query 94948 GAGTTTGC 94955 || || || Sbjct 224 GATTTCGC 217 >seq11270 Length=18388 Score = 104 bits (114), Expect = 3e-17 Identities = 181/262 (69%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 94684 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGT 94743 ||||| ||||| || |||||||| | ||| || | || || | || ||||| || Sbjct 5759 TATATCAAGGACTCGGCCGAGAAGAACCGGCTGTTCCACGCGATGGAGACCGTTCCTTGC 5700 Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA-CAAAGTCGCGTTCCTTTGC 94802 | ||||| || || ||||| || |||| | || | || ||||| || Sbjct 5699 GTGGCGAAGAAGGCCGAGTGGGCCCTGCGGTGGATCGACGGCGGAGAATCGTTC----GC 5644 Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862 ||| | ||| |||| || || || || || || || |||||||| ||| ||||||||| Sbjct 5643 CGAGAGGCTCATCGCTTTCGCCTGCGTCGAAGGCATTTTCTTCTCCGGTAGCTTCTGCGC 5584 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || | |||||| || ||||| || | ||||| || | ||||||||||||| | || Sbjct 5583 GATATTTTGGCTAAAAAAGCGCGGGTTAATGCCCGGGTTAACCTTCTCCAACGAGTTGAT 5524 Query 94923 CTCTCGTGACGAGGGACTCCAC 94944 ||| || ||||| || |||||| Sbjct 5523 CTCGCGAGACGAAGGCCTCCAC 5502 >seq35533 Length=2598 Score = 100 bits (110), Expect = 3e-16 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 |||||||||||||| ||||||||||| |||||| ||||||||||||||| ||||||||| Sbjct 2595 TGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTCACCTTCTCCAACGAGCTCATCTCTCGT 2536 Query 94930 GACGAGGG 94937 |||||||| Sbjct 2535 GACGAGGG 2528 >seq2373 Length=61655 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/130 (76%), Gaps = 12/130 (9%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||||||||| || || ||||||||||| |||| ||||||||| | Sbjct 23220 AAATCCATCCATCTCTGTCAAGAGCTGATTAATAGTTTGCTCCCTCTCATCATTCCC--- 23276 Query 9673 CATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9726 ||| || ||| ||| | ||| | ||||| ||||||||||||||||| || || Sbjct 23277 ---ACCTCCAAGCCCTGCCCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATAAACAC 23333 Query 9727 GATGCATGGT 9736 ||||| ||| Sbjct 23334 AATGCAGGGT 23343 >seq588 Length=109198 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 104138 AGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACG 104196 ||||||| |||| || ||| |||||| ||||||||||||||| | || || | | | Sbjct 12726 AGAGACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCTTACCTATTGAAG 12785 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | | | || ||| | |||| || ||| ||||||| ||| | || | | || || Sbjct 12786 GTCCAAGGGAAGGTTG-TAGAAAGGCCTCAGCACATGTTAATGAGGGTTTCTGTTGGAAT 12844 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 ||| ||| || |||||||| || | | |||||| | | |||||| || | ||| Sbjct 12845 TCACAAGGATGATATTGATTCAGTTATCAAAACATACCATATGATGTCTCAGCGGTGGTT 12904 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 || ||| || | || || || |||||||| || ||||| || || ||| Sbjct 12905 CACTCATGCTTCTCCCACTCTTTTCAATGCAGGGACACCTAGGCCTCAA 12953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582286834662360