Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq57685 168 7e-37
seq80208 120 3e-22
seq86894 104 3e-17
seq36061 104 3e-17
seq622 91.5 2e-13
seq18952 89.7 6e-13
seq1516 89.7 6e-13
seq79654 86.0 7e-12
seq205 86.0 7e-12
seq1975 82.4 8e-11
>seq57685
Length=1792
Score = 168 bits (186), Expect = 7e-37
Identities = 404/605 (67%), Gaps = 6/605 (1%)
Strand=Plus/Minus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239
|||||| | | ||||||| |||||| | || || || || || || | | || |
Sbjct 1790 CCTCAGCAGATGATCATGCGTGTCGCCGTTGGCATTCATGGCGAGGATATCGAGGCTGCC 1731
Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299
||||| ||| ||| ||| | |||||||| |||||||| |||| || || |||
Sbjct 1730 ATCGAGACCTACAACTACATGTCAAACAAGTACTTCACGCACGCTTCGCCGACACTCTTC 1671
Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359
| |||||||| |||| ||| || | ||||||||| | | | ||||| |||
Sbjct 1670 AGTGCTGGTACTCCCAACCCACAGCTGGCCTCCTGCTTCCTCATCGACGTCAAGGAGGAC 1611
Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419
||||| || |||||||| || |||||| || || ||||| ||| | ||
Sbjct 1610 AGCATCGAGGGTATCTACGATACACTCAAGACCTGCGCAATGATCTCGAAGAATGCTGGC 1551
Query 53420 GGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477
|| ||||| || || | || | || ||||||||| || | || || || |
Sbjct 1550 GGCATCGGGTTCAAC-GTTC-ACCGCATCCGTGCGACTGGTTCGTACATTGGCGGCACCA 1493
Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537
| ||| || |||| | || || ||||| || ||||||||||| || || || || |
Sbjct 1492 ATGGCACATCCAATGGTCTGGTACCAATGCTTCGTGTCTTCAACAATACTGCTCGTTATG 1433
Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597
|| |||| ||||| ||||| || | || ||||| ||||||||||| |||||||
Sbjct 1432 TCGACCAAGGTGGCAACAAGCGTCCCGGCGCCTTTGCCATGTACCTCGAGCCATGGCACG 1373
Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC- 53656
| || | | | || || || || || ||| || || | || ||| | || |||
Sbjct 1372 CTGATGTCTTCGCCTTCCTGGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCCG-TGCT 1314
Query 53657 CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716
|||||||| || || || |||||||| || || |||||| | || ||| || |
Sbjct 1313 CGTGACCTCTTCTATGCACTCTGGATTCCCGATCTTTTCATGAAGCGTGTCGAGCAGAAT 1254
Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAG 53776
| || ||| ||||||||||||||||||||||| || || | ||||| || ||
Sbjct 1253 GGAGATTGGACGCTGATGTGCCCGAACGAGTGCCCTGGTCTTGCTGACGTCTATGGCGAT 1194
Query 53777 GAGTT 53781
|||||
Sbjct 1193 GAGTT 1189
>seq80208
Length=1024
Score = 120 bits (132), Expect = 3e-22
Identities = 218/317 (69%), Gaps = 3/317 (1%)
Strand=Plus/Minus
Query 124518 CCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCACATGGCTTGG 124577
|| ||| | |||||||| || ||||| | |||||||| ||| | |||||| || ||
Sbjct 939 CCGGTGGCGATCACGAAGTCGTCGGGCTTGTCCTGCTGCAGCATCATCCACATCGCCCGG 880
Query 124578 ACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGC 124637
|||||||| ||||| ||||||||||||||||| || | ||| || ||| | |
Sbjct 879 GTGTAGTCCTTGGCGTGGCCCCAGTCGCGCTTGGCGTCGATGTTGCCCAGCCGCAGCTCC 820
Query 124638 TTGGCCGTCTTGTTC-CACTCCGCCAAACCCAGT--GTAATCTTGCGCGTCACAAACTCG 124694
|| ||| | | | ||||| |||| || || | |||||| || || ||||||
Sbjct 819 TTCGCCAACCCGAGCTTGATCCGCGCGACCCCGTCGGTGACCTTGCGGGTGACGAACTCG 760
Query 124695 GAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTAC 124754
||||| || ||||||||||||||| || || | | || || || |
Sbjct 759 ACCCCGCGCAGCGGGCTCTCGTGGTTGAACAGGATCCCGTTCGAGGCGTGCAGGGCGAAG 700
Query 124755 GACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTT 124814
|||||||||||| ||||||||| | | | ||||||||| |||||| |||||
Sbjct 699 CTCTCGCGGTAGTTGACCGTCATCCAGTGCGCGTAGAGCTTGGCCACGCCGTAGGGCGAG 640
Query 124815 CGGGGGTAGAATGGGGT 124831
|| |||||||| || ||
Sbjct 639 CGCGGGTAGAACGGCGT 623
>seq86894
Length=901
Score = 104 bits (114), Expect = 3e-17
Identities = 200/292 (68%), Gaps = 11/292 (4%)
Strand=Plus/Minus
Query 124553 CTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGC 124612
||||| ||| |||||||| | | ||||| ||| | |||| |||||||| || ||
Sbjct 397 CTGCAGCATCCGCCACATGCCCTCCACGTACTCCGCCGCGTAGCCCCAGTCACGGACCGC 338
Query 124613 ATCCAGGTTTCCGA------GCTCGATTGGCTTGGCCGTCTTGTTCCACTCCGCCAAACC 124666
||| ||||| || | |||| ||| | | |||| | | | | || ||
Sbjct 337 ATCGAGGTTGCCCATGTACAGCTCCCGCTGCTGACCGGCCTTGATGCGCGCGACCGCAC- 279
Query 124667 CAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAG 124726
| || |||||||| ||||| ||| ||| || ||| |||||||||||||||||
Sbjct 278 --GGGTGATCTTGCGGGTCACGAACGTCTCACCACGACGCGGGGACTCGTGGTTGAACAG 221
Query 124727 AATGCCAGTACA-CGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACC 124785
|| || || || ||| |||| ||||| |||||| ||||| ||||||| ||| |||
Sbjct 220 GAT-CCCGTTCACCGCGTACATGCCGTAGCCCTCGCGATAGTTCTTCGTCACCCAGTACG 162
Query 124786 CAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837
| ||||||| | | | || || ||| || |||||||| || ||||| ||
Sbjct 161 CGTAGAGCTTCGCCGCACCGTACGGGGACCGCGGGTAGAACGGCGTGTTCTC 110
>seq36061
Length=2535
Score = 104 bits (114), Expect = 3e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 124671 GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATG 124730
|| |||||||| ||||| ||||||| || || | || ||||| |||||||| ||
Sbjct 2307 GTGATCTTGCGGGTCACGAACTCGGTCCCCCGCAGGGGCGATTCGTGATTGAACAGGATC 2248
Query 124731 CCAGTACACG-CAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAA 124789
|| | || || | |||| ||||| ||||| || ||||| ||||||||||| | | ||
Sbjct 2247 CCGG-ACGCGGCGAACAGGCCGTAAGACTCCCGATAGTTGACCGTCATCCAATGCGCGAA 2189
Query 124790 GAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAGG 124849
||||| || || || ||||| || ||||| ||||| || || | ||||| |||| |
Sbjct 2188 CAGCTTCGAGACCCCGTAGGGACTGCGGGGATAGAACGGTGTCGTCTCATTCTGGGGAAC 2129
Query 124850 TTGCTGAATCTTCCCAAACATCTC 124873
||||| | || ||||||||
Sbjct 2128 GGCCTGAACCAGGCCGAACATCTC 2105
Score = 102 bits (112), Expect = 9e-17
Identities = 201/294 (68%), Gaps = 5/294 (2%)
Strand=Plus/Minus
Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063
|| || || |||| |||| ||||||| || |||| |||| |||||| |||||| ||
Sbjct 2427 TGCAGGATCAGCCGCATGCCCTCGACATAGTCCTTGGCGTAACCCCAATCGCGCAAAGCG 2368
Query 159064 TCCATGTTCCCGA---GCTCGATGACTTTTCCAGACTTTTTCCACTC-AGCCAGACCGAG 159119
| || |||||| | || | | | | | | | | | | | | ||| | || |
Sbjct 2367 TTCAGGTTCCCTAACCGCACCACGTCCTGTGC-GCCGCGGACGATGCGAGCGACCGCGTG 2309
Query 159120 CGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAAT 159179
|||||||||||| ||||| ||||| | || ||| | ||| || || || ||||| ||
Sbjct 2308 CGTGATCTTGCGGGTCACGAACTCGGTCCCCCGCAGGGGCGATTCGTGATTGAACAGGAT 2249
Query 159180 GCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAA 159239
|||| ||||||||| || ||||| || || || || ||||| | | ||
Sbjct 2248 CCCGGACGCGGCGAACAGGCCGTAAGACTCCCGATAGTTGACCGTCATCCAATGCGCGAA 2189
Query 159240 GAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTG 159293
||||| ||||| ||||| ||||| || ||||| || |||||| |||||| ||
Sbjct 2188 CAGCTTCGAGACCCCGTAGGGACTGCGGGGATAGAACGGTGTCGTCTCATTCTG 2135
>seq622
Length=112193
Score = 91.5 bits (100), Expect = 2e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 15004 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 15063
Query 79684 TGAGCTACGAAAGCA 79698
|||||||||||||||
Sbjct 15064 TGAGCTACGAAAGCA 15078
>seq18952
Length=8638
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 522 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 463
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 462 TGAGCTACGAAAGC 449
>seq1516
Length=78124
Score = 89.7 bits (98), Expect = 6e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
|||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 45579 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 45520
Query 79684 TGAGCTACGAAAGC 79697
||||||||||||||
Sbjct 45519 TGAGCTACGAAAGC 45506
>seq79654
Length=1036
Score = 86.0 bits (94), Expect = 7e-12
Identities = 144/205 (70%), Gaps = 9/205 (4%)
Strand=Plus/Minus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787
|||||| ||| ||||| |||| |||||| | || |||||| || || ||| | |
Sbjct 384 TCAAGGCGATCTACCGCACGGCGTGGGAACTGCCGCAGAAGGCGCTCATCGACCTCGCGG 325
Query 55788 CTGATCGTGGTG--CGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
| | || ||| |||||||||||||| |||||| || ||| | ||| | | ||
Sbjct 324 CGG--CGCGGTCGCCGTACATCGACCAGAGCCAGTCGCTCAACCTGTTCCTCGCCTCGCC 267
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
|| | | |||| | ||||||||| || | |||| ||||||| || |||||||||
Sbjct 266 GTCGATCGGCAAGCTCAGCTCGATGTACCTGTACGCGTGGAAGTCCGGGCTCAAGACG-- 209
Query 55906 TATGTACTATCTGCGGACCCGCGCC 55930
| |||||| ||||| | ||||||
Sbjct 208 -ACGTACTACCTGCG--CTCGCGCC 187
>seq205
Length=149386
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||||
Sbjct 12164 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 12105
Query 79684 TGAGCTACGAAAGC 79697
||||||| ||||||
Sbjct 12104 TGAGCTATGAAAGC 12091
>seq1975
Length=67967
Score = 82.4 bits (90), Expect = 8e-11
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683
||||||| |||| | || |||| ||||||||||||||||||||||||||| |||||
Sbjct 61563 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 61504
Query 79684 TGAGCTACGAAAGCA 79698
||||||| |||||||
Sbjct 61503 TGAGCTATGAAAGCA 61489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546302224522200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |