Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq57685 168 7e-37 seq80208 120 3e-22 seq86894 104 3e-17 seq36061 104 3e-17 seq622 91.5 2e-13 seq18952 89.7 6e-13 seq1516 89.7 6e-13 seq79654 86.0 7e-12 seq205 86.0 7e-12 seq1975 82.4 8e-11 >seq57685 Length=1792 Score = 168 bits (186), Expect = 7e-37 Identities = 404/605 (67%), Gaps = 6/605 (1%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| |||||| | || || || || || || | | || | Sbjct 1790 CCTCAGCAGATGATCATGCGTGTCGCCGTTGGCATTCATGGCGAGGATATCGAGGCTGCC 1731 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 ||||| ||| ||| ||| | |||||||| |||||||| |||| || || ||| Sbjct 1730 ATCGAGACCTACAACTACATGTCAAACAAGTACTTCACGCACGCTTCGCCGACACTCTTC 1671 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 | |||||||| |||| ||| || | ||||||||| | | | ||||| ||| Sbjct 1670 AGTGCTGGTACTCCCAACCCACAGCTGGCCTCCTGCTTCCTCATCGACGTCAAGGAGGAC 1611 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 ||||| || |||||||| || |||||| || || ||||| ||| | || Sbjct 1610 AGCATCGAGGGTATCTACGATACACTCAAGACCTGCGCAATGATCTCGAAGAATGCTGGC 1551 Query 53420 GGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 || ||||| || || | || | || ||||||||| || | || || || | Sbjct 1550 GGCATCGGGTTCAAC-GTTC-ACCGCATCCGTGCGACTGGTTCGTACATTGGCGGCACCA 1493 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 | ||| || |||| | || || ||||| || ||||||||||| || || || || | Sbjct 1492 ATGGCACATCCAATGGTCTGGTACCAATGCTTCGTGTCTTCAACAATACTGCTCGTTATG 1433 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 || |||| ||||| ||||| || | || ||||| ||||||||||| ||||||| Sbjct 1432 TCGACCAAGGTGGCAACAAGCGTCCCGGCGCCTTTGCCATGTACCTCGAGCCATGGCACG 1373 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC- 53656 | || | | | || || || || || ||| || || | || ||| | || ||| Sbjct 1372 CTGATGTCTTCGCCTTCCTGGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCCG-TGCT 1314 Query 53657 CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716 |||||||| || || || |||||||| || || |||||| | || ||| || | Sbjct 1313 CGTGACCTCTTCTATGCACTCTGGATTCCCGATCTTTTCATGAAGCGTGTCGAGCAGAAT 1254 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAG 53776 | || ||| ||||||||||||||||||||||| || || | ||||| || || Sbjct 1253 GGAGATTGGACGCTGATGTGCCCGAACGAGTGCCCTGGTCTTGCTGACGTCTATGGCGAT 1194 Query 53777 GAGTT 53781 ||||| Sbjct 1193 GAGTT 1189 >seq80208 Length=1024 Score = 120 bits (132), Expect = 3e-22 Identities = 218/317 (69%), Gaps = 3/317 (1%) Strand=Plus/Minus Query 124518 CCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCACATGGCTTGG 124577 || ||| | |||||||| || ||||| | |||||||| ||| | |||||| || || Sbjct 939 CCGGTGGCGATCACGAAGTCGTCGGGCTTGTCCTGCTGCAGCATCATCCACATCGCCCGG 880 Query 124578 ACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGC 124637 |||||||| ||||| ||||||||||||||||| || | ||| || ||| | | Sbjct 879 GTGTAGTCCTTGGCGTGGCCCCAGTCGCGCTTGGCGTCGATGTTGCCCAGCCGCAGCTCC 820 Query 124638 TTGGCCGTCTTGTTC-CACTCCGCCAAACCCAGT--GTAATCTTGCGCGTCACAAACTCG 124694 || ||| | | | ||||| |||| || || | |||||| || || |||||| Sbjct 819 TTCGCCAACCCGAGCTTGATCCGCGCGACCCCGTCGGTGACCTTGCGGGTGACGAACTCG 760 Query 124695 GAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTAC 124754 ||||| || ||||||||||||||| || || | | || || || | Sbjct 759 ACCCCGCGCAGCGGGCTCTCGTGGTTGAACAGGATCCCGTTCGAGGCGTGCAGGGCGAAG 700 Query 124755 GACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTT 124814 |||||||||||| ||||||||| | | | ||||||||| |||||| ||||| Sbjct 699 CTCTCGCGGTAGTTGACCGTCATCCAGTGCGCGTAGAGCTTGGCCACGCCGTAGGGCGAG 640 Query 124815 CGGGGGTAGAATGGGGT 124831 || |||||||| || || Sbjct 639 CGCGGGTAGAACGGCGT 623 >seq86894 Length=901 Score = 104 bits (114), Expect = 3e-17 Identities = 200/292 (68%), Gaps = 11/292 (4%) Strand=Plus/Minus Query 124553 CTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGC 124612 ||||| ||| |||||||| | | ||||| ||| | |||| |||||||| || || Sbjct 397 CTGCAGCATCCGCCACATGCCCTCCACGTACTCCGCCGCGTAGCCCCAGTCACGGACCGC 338 Query 124613 ATCCAGGTTTCCGA------GCTCGATTGGCTTGGCCGTCTTGTTCCACTCCGCCAAACC 124666 ||| ||||| || | |||| ||| | | |||| | | | | || || Sbjct 337 ATCGAGGTTGCCCATGTACAGCTCCCGCTGCTGACCGGCCTTGATGCGCGCGACCGCAC- 279 Query 124667 CAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAG 124726 | || |||||||| ||||| ||| ||| || ||| ||||||||||||||||| Sbjct 278 --GGGTGATCTTGCGGGTCACGAACGTCTCACCACGACGCGGGGACTCGTGGTTGAACAG 221 Query 124727 AATGCCAGTACA-CGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACC 124785 || || || || ||| |||| ||||| |||||| ||||| ||||||| ||| ||| Sbjct 220 GAT-CCCGTTCACCGCGTACATGCCGTAGCCCTCGCGATAGTTCTTCGTCACCCAGTACG 162 Query 124786 CAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 | ||||||| | | | || || ||| || |||||||| || ||||| || Sbjct 161 CGTAGAGCTTCGCCGCACCGTACGGGGACCGCGGGTAGAACGGCGTGTTCTC 110 >seq36061 Length=2535 Score = 104 bits (114), Expect = 3e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 124671 GTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATG 124730 || |||||||| ||||| ||||||| || || | || ||||| |||||||| || Sbjct 2307 GTGATCTTGCGGGTCACGAACTCGGTCCCCCGCAGGGGCGATTCGTGATTGAACAGGATC 2248 Query 124731 CCAGTACACG-CAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAA 124789 || | || || | |||| ||||| ||||| || ||||| ||||||||||| | | || Sbjct 2247 CCGG-ACGCGGCGAACAGGCCGTAAGACTCCCGATAGTTGACCGTCATCCAATGCGCGAA 2189 Query 124790 GAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAGG 124849 ||||| || || || ||||| || ||||| ||||| || || | ||||| |||| | Sbjct 2188 CAGCTTCGAGACCCCGTAGGGACTGCGGGGATAGAACGGTGTCGTCTCATTCTGGGGAAC 2129 Query 124850 TTGCTGAATCTTCCCAAACATCTC 124873 ||||| | || |||||||| Sbjct 2128 GGCCTGAACCAGGCCGAACATCTC 2105 Score = 102 bits (112), Expect = 9e-17 Identities = 201/294 (68%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 || || || |||| |||| ||||||| || |||| |||| |||||| |||||| || Sbjct 2427 TGCAGGATCAGCCGCATGCCCTCGACATAGTCCTTGGCGTAACCCCAATCGCGCAAAGCG 2368 Query 159064 TCCATGTTCCCGA---GCTCGATGACTTTTCCAGACTTTTTCCACTC-AGCCAGACCGAG 159119 | || |||||| | || | | | | | | | | | | | | ||| | || | Sbjct 2367 TTCAGGTTCCCTAACCGCACCACGTCCTGTGC-GCCGCGGACGATGCGAGCGACCGCGTG 2309 Query 159120 CGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAAT 159179 |||||||||||| ||||| ||||| | || ||| | ||| || || || ||||| || Sbjct 2308 CGTGATCTTGCGGGTCACGAACTCGGTCCCCCGCAGGGGCGATTCGTGATTGAACAGGAT 2249 Query 159180 GCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAA 159239 |||| ||||||||| || ||||| || || || || ||||| | | || Sbjct 2248 CCCGGACGCGGCGAACAGGCCGTAAGACTCCCGATAGTTGACCGTCATCCAATGCGCGAA 2189 Query 159240 GAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTG 159293 ||||| ||||| ||||| ||||| || ||||| || |||||| |||||| || Sbjct 2188 CAGCTTCGAGACCCCGTAGGGACTGCGGGGATAGAACGGTGTCGTCTCATTCTG 2135 >seq622 Length=112193 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 15004 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 15063 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 15064 TGAGCTACGAAAGCA 15078 >seq18952 Length=8638 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 522 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 463 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 462 TGAGCTACGAAAGC 449 >seq1516 Length=78124 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 45579 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 45520 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 45519 TGAGCTACGAAAGC 45506 >seq79654 Length=1036 Score = 86.0 bits (94), Expect = 7e-12 Identities = 144/205 (70%), Gaps = 9/205 (4%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| ||| ||||| |||| |||||| | || |||||| || || ||| | | Sbjct 384 TCAAGGCGATCTACCGCACGGCGTGGGAACTGCCGCAGAAGGCGCTCATCGACCTCGCGG 325 Query 55788 CTGATCGTGGTG--CGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 | | || ||| |||||||||||||| |||||| || ||| | ||| | | || Sbjct 324 CGG--CGCGGTCGCCGTACATCGACCAGAGCCAGTCGCTCAACCTGTTCCTCGCCTCGCC 267 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 || | | |||| | ||||||||| || | |||| ||||||| || ||||||||| Sbjct 266 GTCGATCGGCAAGCTCAGCTCGATGTACCTGTACGCGTGGAAGTCCGGGCTCAAGACG-- 209 Query 55906 TATGTACTATCTGCGGACCCGCGCC 55930 | |||||| ||||| | |||||| Sbjct 208 -ACGTACTACCTGCG--CTCGCGCC 187 >seq205 Length=149386 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 12164 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 12105 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 12104 TGAGCTATGAAAGC 12091 >seq1975 Length=67967 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 61563 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 61504 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 61503 TGAGCTATGAAAGCA 61489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546302224522200