Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq89412 129 2e-25 >seq89412 Length=862 Score = 129 bits (142), Expect = 2e-25 Identities = 436/673 (65%), Gaps = 27/673 (4%) Strand=Plus/Minus Query 2578 CCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTG 2637 |||||| ||||| ||||| ||||||||||||| || ||||| | ||||| | Sbjct 747 CCAGCAGGCGTCGGTTGTTGAACCAGTCCACCCATTCCAGGGTGGCGAACTCCACGGCCT 688 Query 2638 CACGGTTTTTCCA------GCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGA 2691 | | | ||| || | ||||| || ||||| || ||| | || || |||| Sbjct 687 CGAAGCTCCGCCACGGACCGCGC---CGGTGGATCACCTCGGCCTTGAACAGGCCGTTGA 631 Query 2692 TGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATC 2751 |||||||||| | ||||| || || || ||||| || || || | | | | | Sbjct 630 TGCTCTCAGCGAGGGCGTTATCGTAGGAATCGCCGACGCTGCCGACCGAGGGCTGGACGC 571 Query 2752 CGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGT 2811 | || || || ||||| || ||| ||| | | ||||| || || | || || Sbjct 570 CCGCCTCGACGAGGCGCTCGGTGTAGCGCAGCGCAAGGTACTGCGACCCCCTGTCCGAGT 511 Query 2812 GATGGATG--------GTGCCAGACGG-ACGACGGGCCCACAACGCCTGCTCCAGCGCAT 2862 | || | | || | ||||| ||| || || ||||||||||| || | Sbjct 510 GGTGCACGAGCCCGTCGTTTCGGACGGGACGGCGCTGGTGCAGGGCCTGCTCCAGGGCGT 451 Query 2863 CCAGCACGAATGTCGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAA 2922 |||||||||| ||| | || | ||| || ||||| || |||||| | ||||| Sbjct 450 CCAGCACGAAGCTCGCGTGGGCAGCCCGTGACACGCGCCAACCGACGATGCGCCGGGCAA 391 Query 2923 ACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAAT 2982 | | || |||| || ||||| ||||||||||| ||| || ||||| || || | Sbjct 390 AGGCGTCGATGACGAATGCCACGTAGACGAAGCCTGACCAGGTCGCCACGTAGGTGAAGT 331 Query 2983 CAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTG 3042 | ||||||| | || || |||| |||||| ||||| ||||||| || | Sbjct 330 CGCTGACCCACAAGGCATTTGGCCGCGGTGCCCTGAACTGGCGGTTGACGCGGT--CCAG 273 Query 3043 C-GGCAA-CGGCTTTCCGGCT----GATGGTCGTACGGACCTTTTTACCCCGGAGAACAC 3096 | ||||| |||| |||| | |||||| || || |||||| | ||||| | || | Sbjct 272 CGGGCAAGCGGC-AGCCGGGTCAGGGATGGTGGTGCGAACCTTTCTGCCCCGCACCACCC 214 Query 3097 CGGCAAGTCCCATAACCGCCATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTT 3156 | || ||||| | ||| || ||||| || ||||| | |||| | ||| |||| Sbjct 213 CTTTCAGCCCCATGCGCCGCATCAGGCGTGCGACCGTACAACGGGCCGTCACGATCCCTT 154 Query 3157 CCCGTAACAACTGACGCCAGACTTTACGCACACCGTACACCTGATGATTTTCATCGTATA 3216 |||| | ||| ||||| || || ||||| ||||| || || || | ||| | | Sbjct 153 CCCGCGCGAGCTGCCGCCAAACCTTGCGCACGCCGTAGACATGGAAGTTCGCCTCGAACA 94 Query 3217 CGCGCTGTATCTC 3229 ||||| | ||||| Sbjct 93 CGCGCCGGATCTC 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 202965010542370