Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_028449.1
Length=63569
Score E
Sequences producing significant alignments: (Bits) Value
seq89412 129 2e-25
>seq89412
Length=862
Score = 129 bits (142), Expect = 2e-25
Identities = 436/673 (65%), Gaps = 27/673 (4%)
Strand=Plus/Minus
Query 2578 CCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTG 2637
|||||| ||||| ||||| ||||||||||||| || ||||| | ||||| |
Sbjct 747 CCAGCAGGCGTCGGTTGTTGAACCAGTCCACCCATTCCAGGGTGGCGAACTCCACGGCCT 688
Query 2638 CACGGTTTTTCCA------GCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGA 2691
| | | ||| || | ||||| || ||||| || ||| | || || ||||
Sbjct 687 CGAAGCTCCGCCACGGACCGCGC---CGGTGGATCACCTCGGCCTTGAACAGGCCGTTGA 631
Query 2692 TGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATC 2751
|||||||||| | ||||| || || || ||||| || || || | | | | |
Sbjct 630 TGCTCTCAGCGAGGGCGTTATCGTAGGAATCGCCGACGCTGCCGACCGAGGGCTGGACGC 571
Query 2752 CGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGT 2811
| || || || ||||| || ||| ||| | | ||||| || || | || ||
Sbjct 570 CCGCCTCGACGAGGCGCTCGGTGTAGCGCAGCGCAAGGTACTGCGACCCCCTGTCCGAGT 511
Query 2812 GATGGATG--------GTGCCAGACGG-ACGACGGGCCCACAACGCCTGCTCCAGCGCAT 2862
| || | | || | ||||| ||| || || ||||||||||| || |
Sbjct 510 GGTGCACGAGCCCGTCGTTTCGGACGGGACGGCGCTGGTGCAGGGCCTGCTCCAGGGCGT 451
Query 2863 CCAGCACGAATGTCGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAA 2922
|||||||||| ||| | || | ||| || ||||| || |||||| | |||||
Sbjct 450 CCAGCACGAAGCTCGCGTGGGCAGCCCGTGACACGCGCCAACCGACGATGCGCCGGGCAA 391
Query 2923 ACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAAT 2982
| | || |||| || ||||| ||||||||||| ||| || ||||| || || |
Sbjct 390 AGGCGTCGATGACGAATGCCACGTAGACGAAGCCTGACCAGGTCGCCACGTAGGTGAAGT 331
Query 2983 CAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTG 3042
| ||||||| | || || |||| |||||| ||||| ||||||| || |
Sbjct 330 CGCTGACCCACAAGGCATTTGGCCGCGGTGCCCTGAACTGGCGGTTGACGCGGT--CCAG 273
Query 3043 C-GGCAA-CGGCTTTCCGGCT----GATGGTCGTACGGACCTTTTTACCCCGGAGAACAC 3096
| ||||| |||| |||| | |||||| || || |||||| | ||||| | || |
Sbjct 272 CGGGCAAGCGGC-AGCCGGGTCAGGGATGGTGGTGCGAACCTTTCTGCCCCGCACCACCC 214
Query 3097 CGGCAAGTCCCATAACCGCCATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTT 3156
| || ||||| | ||| || ||||| || ||||| | |||| | ||| ||||
Sbjct 213 CTTTCAGCCCCATGCGCCGCATCAGGCGTGCGACCGTACAACGGGCCGTCACGATCCCTT 154
Query 3157 CCCGTAACAACTGACGCCAGACTTTACGCACACCGTACACCTGATGATTTTCATCGTATA 3216
|||| | ||| ||||| || || ||||| ||||| || || || | ||| | |
Sbjct 153 CCCGCGCGAGCTGCCGCCAAACCTTGCGCACGCCGTAGACATGGAAGTTCGCCTCGAACA 94
Query 3217 CGCGCTGTATCTC 3229
||||| | |||||
Sbjct 93 CGCGCCGGATCTC 81
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 202965010542370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |