Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028665.1 Length=56982 Score E Sequences producing significant alignments: (Bits) Value seq93363 118 4e-22 >seq93363 Length=802 Score = 118 bits (130), Expect = 4e-22 Identities = 181/254 (71%), Gaps = 8/254 (3%) Strand=Plus/Minus Query 5527 CAGCGTAACGCCGTGAGCAAGGCCAAGGATTACCTCGAATACTCGGCGTTCTCCCGTTCG 5586 |||| |||||||| | ||||||||| |||||||| | | | |||||||||| || Sbjct 748 CAGCAGAACGCCGTCAAGAAGGCCAAGTCCTACCTCGACTTCACCTCGTTCTCCCGCTCC 689 Query 5587 GGCCTGATCAAGCAACTCGCGTTCGAGGGATTCAGCGAC-GCCGACGCGACGTTCGCCGT 5645 || ||||| ||| || | || |||||| ||| |||| |||||||| || | || ||| Sbjct 688 GGTTTGATCGGGCAGCTGGAGTACGAGGGCTTCT-CGACCGCCGACGCCACCTACGGCGT 630 Query 5646 CGACTCGCTCGACACCG---ATTGGGATGCGCAGGCGGTGAAGAAAGCCGCCGAGTACAT 5702 || | || ||||| | ||| | | |||||| |||||| |||||| ||| | Sbjct 629 GGAT---CACGTCACCGTGGACTGGTACGAGCAGGCCAAGAAGAAGGCCGCCTCCTACCT 573 Query 5703 GGATTACTCGTCGTTCTCGCAGCAGGGCCTCGTCGATCAACTCGTGTTCGAGGGATTCAC 5762 | | | | || ||||| | ||||||| | |||| || |||| || |||||||||||| Sbjct 572 GCAGTTCAGCTCCTTCTCCCGGCAGGGCTTGATCGACCAGCTCGAGTACGAGGGATTCAC 513 Query 5763 GCAGGCGCAGGCCG 5776 || | ||||||| Sbjct 512 CCACGATCAGGCCG 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181931730503392