Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028751.1 Length=58671 Score E Sequences producing significant alignments: (Bits) Value seq81249 109 2e-19 >seq81249 Length=1001 Score = 109 bits (120), Expect = 2e-19 Identities = 171/242 (71%), Gaps = 12/242 (5%) Strand=Plus/Minus Query 47679 GCAGCGTCGACGCCGTGGTTTGCGACCCGCCCTACGAGCTGGCCTTCATGGGCAAGAAGT 47738 ||||||| ||||||| || ||| |||||||||| || | |||||||||| | | Sbjct 242 GCAGCGTGCACGCCGTCGTCACCGATCCGCCCTACGCCCTCGACTTCATGGGCCACGGCT 183 Query 47739 GGGACGGCT-------CGGGTATCGCCTTCGATGT--CGAGATGTGGGA-GC--AATGCC 47786 |||| ||| ||| | || | || |||| ||||| || | |||| Sbjct 182 GGGATCGCTACACCCCCGGCGAGTTCCAGCACTGGTGCGAGCAGTGGGCCGCCGAGTGCC 123 Query 47787 TGCGGGCCCTCAAACCTGGCGGGCACCTGCTCGCGTTCGGTGGCTCGCGTACCTGGCATC 47846 | || ||||||||| |||||||| || ||||| ||||| || | || |||| || | Sbjct 122 TCCGCATCCTCAAACCCGGCGGGCAGCTCCTCGCCTTCGGCGGTACTCGCACCTTCCACC 63 Query 47847 GGCTGGCTGTGGCAATCGAGGACGCGGGCTTCGAGATTCGTGACTCTATCGCGTGGCTGT 47906 | || |||| | |||||||||||| || |||||||| || ||||| ||||||||||| | Sbjct 62 GCCTCGCTGCCGGAATCGAGGACGCCGGATTCGAGATCCGCGACTCGATCGCGTGGCTCT 3 Query 47907 AC 47908 || Sbjct 2 AC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187327956494194