Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_028770.1
Length=59878
Score E
Sequences producing significant alignments: (Bits) Value
seq67250 185 3e-42
seq89734 134 5e-27
seq79385 87.8 7e-13
>seq67250
Length=1371
Score = 185 bits (204), Expect = 3e-42
Identities = 478/708 (68%), Gaps = 39/708 (6%)
Strand=Plus/Minus
Query 32688 CTCCTGATCGTGGACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAAGACCTGCTGTCC 32747
||| | ||| | ||||| | ||| |||||||||||| | | || ||||| ||||||
Sbjct 697 CTCATCATCATCGACGAATGCTCGATGGTGGACGAGGAACTCGGCCGCGACCTCCTGTCC 638
Query 32748 TTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCCGTCATGGGGGCC 32807
||||| ||| |||| | ||||||||| |||| |||||||||||||| | ||| | |
Sbjct 637 TTCGGCAAGCCCGTCCTGGTGCTGGGCGACACCGCGCAGCTGCCGCCCGTGAAGGGCGGC 578
Query 32808 GGGTTCTTCACC-AAGCAGAAGGCCGACTTCCTCCTGACCGACATCCACCGACAGGCCCG 32866
|| ||||||||| | || | || ||||| | | |||||||| | || || |||||
Sbjct 577 GGCTTCTTCACCGACGCCG-AGCCCGACGTGATGCTGACCGAGGTGCATCGCCAGGCGGC 519
Query 32867 CGACAACCCGATCATCGAGATGTCTCGCATCGTCCGCGAAGGCGGTGCCCTGTCCCTGGG 32926
|||||| || |||||| ||||| | || ||||| || || ||| || ||
Sbjct 518 CGACAATCCCATCATCCGCATGTCGATGACGGTGCGCGAGGGTGGCCGGCTGCAGCTCGG 459
Query 32927 TCGCTACGGGGAGAGCGAGGTGGTGCGCATGGCTGACTTCCAGCGCGAC-TGGGTGTTCC 32985
||| || ||||||| |||| | ||| || || || || ||| | | ||| | |
Sbjct 458 CGCCTATGGCGAGAGCGGGGTGCTCCGCCGTGCCGAGATCGAG-GCGCCGCGCGTGATGC 400
Query 32986 AGGCCGACCAGATCCTGGTCGGGAAGAACGACACCCGCCGTGCCTACAACCGCCGCATCC 33045
|| |||||||| | |||||||| | ||| | ||||| || ||||||||| ||||||| |
Sbjct 399 AGTCCGACCAGGTGCTGGTCGGCATCAACAAGACCCGGCGCGCCTACAACGGCCGCATGC 340
Query 33046 GCGAGCTCCGAGGAGCCGCTCAGGCG--TACCCGCACCAGGGAGACAAGCTGGTCTGCCT 33103
|| ||| | | ||| || |||| | ||| | || || ||||| || |||||
Sbjct 339 GCACGCT--GCTGGGCCATTCCGGCGACAAGCCGGAGATCGGCGAGAAGCTCGTGTGCCT 282
Query 33104 GCGGAACAACCACGACTCTGGCCTGCTGAACGGCTCGCTCTGGACGGTGGAAACCGCGCT 33163
||| ||| || | | |||||||| |||||| ||||| | | || || |
Sbjct 281 GCGCAACGACAAGAAGAAGGGCCTGCTCAACGGCGGCACCTGGA---TCGTCACGGCCGT 225
Query 33164 CGACTCCGGGGACGGCTTC--GTT-GCGCTCGAGC-TC---CTGGGCGAGGAAGGCCAGA 33216
| || ||| |||| | ||| || || ||| || | || ||||| ||| ||
Sbjct 224 CCACGCCGACCGCGGCGCCAAGTTCTCGTTC-AGCGTCAGGCCGGAGGAGGAGGGCAAGC 166
Query 33217 G-AGTCGCGTCCTCCGCCCACG-GCTGCCTG--TTCCACGGACAGAACCCCGA-GTGG-- 33269
| | | ||| | | || |||||| | ||| || || | ||| | ||
Sbjct 165 GCAAGCCCGTGC-GGGTGGGCGTGCTGCCGGCCTTCTTCG---AGGGGCGCGACGAGGAC 110
Query 33270 ------TACGAGAAGAAG---GAGGCGGACGAGTTCGACTACGGCTACGCCCTGACCGTG 33320
|||| | ||||| ||| ||||| ||||||||| ||||||||| ||||| ||
Sbjct 109 ATCCCCTACGCGCAGAAGCGCGAGTCGGACCAGTTCGACTTCGGCTACGCGCTGACGGTC 50
Query 33321 CACAAGAGCCAGGGCTCCCAGTGGGACGACGTGCTCGTCATCGACGAG 33368
|||||| |||||||| ||||||||||||||| | | ||||||||
Sbjct 49 CACAAGGCGCAGGGCTCGCAGTGGGACGACGTGGTGCTGTTCGACGAG 2
Score = 107 bits (118), Expect = 7e-19
Identities = 125/166 (75%), Gaps = 2/166 (1%)
Strand=Plus/Minus
Query 32334 TTCCGCCTGTTCGGCTACGCCGGAACTGGCAAGACCACGCTGGCCCGGCACATCGCCGAG 32393
||||||||||||||||| ||||| || ||||||||||||||||| ||| |||||||||
Sbjct 937 TTCCGCCTGTTCGGCTATGCCGGCACCGGCAAGACCACGCTGGCGAAGCAGATCGCCGAG 878
Query 32394 GGCATCGAC-GGCACCGTTCTCTTCGCCGCCCCGACCGGGAAGGCCGCCTACGTCCTGAA 32452
| | || | ||| || ||||| ||| || || ||||||||| || |||||
Sbjct 877 GAC-GCGCCGGGCGAGGTCGCCTTCGGGGCCTACACGGGCAAGGCCGCCCTGGTGCTGAA 819
Query 32453 GACGAAGGGCTGCCCGAACACCGGCACCATCCACCAGCTGATCTAC 32498
| | |||||||||| | | || ||||||||| | ||||||||
Sbjct 818 GTCCAAGGGCTGCCGGGGCGCCTCCACCATCCATTCGATGATCTAC 773
>seq89734
Length=855
Score = 134 bits (148), Expect = 5e-27
Identities = 321/479 (67%), Gaps = 10/479 (2%)
Strand=Plus/Plus
Query 32679 AAGGCGAAGCTCCTGATCGTGGACGAGTCCTCCATGGTGGA---CGAGCAGGTGGGAGAA 32735
||||| | ||| | || | ||||||| ||| ||||| || ||| | | || |
Sbjct 189 AAGGCCGACCTCATCGTCATCGACGAGTGCTCGATGGTCGATTCCGACC---TCGGCCAC 245
Query 32736 GACCTGCTGTCCTTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCC 32795
||||||||||| |||| |||| | || | || |||||||| || |||||||||||
Sbjct 246 GACCTGCTGTCGTTCGACAAGCCGGTGCTGGTGCTCGGCGACCCGGCGCAGCTGCCGCCG 305
Query 32796 GTCATGGGGGCCGGGTTCTTCACCAAGCAGAAGGCCGACTTCCTCCTGACCGACATCCAC 32855
|| || | ||| ||||||||| || || ||||| | | |||||||| |||||
Sbjct 306 GTGCGCGGCGGCGGCTTCTTCACCGAGGCCGAGCCCGACGTGATGCTGACCGAGGTCCAC 365
Query 32856 CGACAGGCCCGCGACAACCCGATCATCGAGATGTCTCGCATCGTCCGCGAAGGCGGTGCC 32915
|| |||||| ||| |||||||| | ||| | | || ||||| |||||
Sbjct 366 CGCCAGGCCAAGGACGACCCGATCGTGCGCATGGCGATGACGGTGCGCGAGGGCGGCCGG 425
Query 32916 CTGTCCCTGGGTCGCTACGGGGAGAGCGAGGTGGT-GCGCATGGCTGACTTCCAGCGCGA 32974
|| | || || ||||| | ||| ||||| ||| || | | || | | |||
Sbjct 426 CTCGCGCTCGGCGAGTACGGCGCCAGCCGCGTGGTCTCGCGCCGC-GCCATCGA-CCCGA 483
Query 32975 -CTGGGTGTTCCAGGCCGACCAGATCCTGGTCGGGAAGAACGACACCCGCCGTGCCTACA 33033
| |||| || | ||||||| | ||||| || | |||| | ||||||||| |||||
Sbjct 484 CCCAGGTGCTCGACTGCGACCAGGTGCTGGTGGGCATGAACAAGACCCGCCGTCTCTACA 543
Query 33034 ACCGCCGCATCCGCGAGCTCCGAGGAGCCGCTCAGGCGTACCCGCACCAGGGAGACAAGC 33093
|| | || | || |||||| || || | || ||| ||| || ||||
Sbjct 544 ACGGGCGGCTGCGGGAGCTCGCCGGCCACGTCGACCCGATGCCGGCGGTGGGCGAGAAGC 603
Query 33094 TGGTCTGCCTGCGGAACAACCACGACTCTGGCCTGCTGAACGGCTCGCTCTGGACGGTG 33152
||||||||||||| ||| ||| | | |||||||| ||||||||| ||||||||||
Sbjct 604 TGGTCTGCCTGCGCAACGACCGCACCAAGGGCCTGCTCAACGGCTCGACCTGGACGGTG 662
Score = 82.4 bits (90), Expect = 3e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 32374 TGGCCCGGCACATCGCCGAGGGCATCGACGGCACCGTTCTCTTCGCCGCCCCGACCGGGA 32433
||||||| | ||||||||| | | |||||||| | || | |||| |||| ||||| |
Sbjct 1 TGGCCCGCCGCATCGCCGACGACGTCGACGGCTCGGTGGTGTTCGGCGCCTTCACCGGCA 60
Query 32434 AGGCCGCCTACGTCCTGAAGACGAAGGGCTGCCCGAACACCGGCACCATCCACCAGCTGA 32493
|||| |||| || || ||||||||||| | || ||| || |||||| |||||
Sbjct 61 AGGCGGCCTCGGTGATGCGCCAGAAGGGCTGCCAGGACGCCGCGACGATCCACTCGCTGA 120
Query 32494 TCTACACCCCGAAGGAGA 32511
||||| | | |||||||
Sbjct 121 TCTACCGCACCAAGGAGA 138
>seq79385
Length=1039
Score = 87.8 bits (96), Expect = 7e-13
Identities = 178/260 (68%), Gaps = 6/260 (2%)
Strand=Plus/Minus
Query 5912 TCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGCTCGGCTTCCTGC 5971
||||||| || || | | || || || || ||||| | ||| ||| ||||||||||
Sbjct 478 TCCAGCGGCTGATCCTGTCGCGCCCGGCGGTGGAGGCGGGCGAGCGGCTGGGCTTCCTGC 419
Query 5972 CCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGACGCGGTGATCG 6031
||||| || | |||||| | | ||||| ||| |||| || |||||| | ||
Sbjct 418 CCGGCGACATGAAGGAGAAGGTCGACCCCTATCTCCGCCCGCTGTACGACGCGCTCTACG 359
Query 6032 ACCTGGTCGGCCCGACGATGACG--AAGCGCCTCCTCGAGTCGCGCCAGCTGGAGGTCGC 6089
|| || | ||||| ||| | | |||| | ||| ||| || || | ||| ||||
Sbjct 358 ACATG--CTGCCCGCCGAGCAGGTCGAGCGGCGGATCGCATCG-GCGAGATCGAGATCGC 302
Query 6090 CCCGCTGGCCTACATGCGAGGCCGGACGTTCAACGACACGTACATCGTCGCTGACGAGAT 6149
|| | |||| |||||| ||||| ||| | ||| ||| |||| || ||||||
Sbjct 301 GCCCATCGCCTTCATGCGCGGCCGCACGCTGGCGGACGCGTTCATCATCCTCGACGAGGC 242
Query 6150 GCAGAACGCCAC-CCCGCGC 6168
||||||| |||| |||||||
Sbjct 241 GCAGAACACCACGCCCGCGC 222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 191184229301120
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