Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq67250 185 3e-42 seq89734 134 5e-27 seq79385 87.8 7e-13 >seq67250 Length=1371 Score = 185 bits (204), Expect = 3e-42 Identities = 478/708 (68%), Gaps = 39/708 (6%) Strand=Plus/Minus Query 32688 CTCCTGATCGTGGACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAAGACCTGCTGTCC 32747 ||| | ||| | ||||| | ||| |||||||||||| | | || ||||| |||||| Sbjct 697 CTCATCATCATCGACGAATGCTCGATGGTGGACGAGGAACTCGGCCGCGACCTCCTGTCC 638 Query 32748 TTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCCGTCATGGGGGCC 32807 ||||| ||| |||| | ||||||||| |||| |||||||||||||| | ||| | | Sbjct 637 TTCGGCAAGCCCGTCCTGGTGCTGGGCGACACCGCGCAGCTGCCGCCCGTGAAGGGCGGC 578 Query 32808 GGGTTCTTCACC-AAGCAGAAGGCCGACTTCCTCCTGACCGACATCCACCGACAGGCCCG 32866 || ||||||||| | || | || ||||| | | |||||||| | || || ||||| Sbjct 577 GGCTTCTTCACCGACGCCG-AGCCCGACGTGATGCTGACCGAGGTGCATCGCCAGGCGGC 519 Query 32867 CGACAACCCGATCATCGAGATGTCTCGCATCGTCCGCGAAGGCGGTGCCCTGTCCCTGGG 32926 |||||| || |||||| ||||| | || ||||| || || ||| || || Sbjct 518 CGACAATCCCATCATCCGCATGTCGATGACGGTGCGCGAGGGTGGCCGGCTGCAGCTCGG 459 Query 32927 TCGCTACGGGGAGAGCGAGGTGGTGCGCATGGCTGACTTCCAGCGCGAC-TGGGTGTTCC 32985 ||| || ||||||| |||| | ||| || || || || ||| | | ||| | | Sbjct 458 CGCCTATGGCGAGAGCGGGGTGCTCCGCCGTGCCGAGATCGAG-GCGCCGCGCGTGATGC 400 Query 32986 AGGCCGACCAGATCCTGGTCGGGAAGAACGACACCCGCCGTGCCTACAACCGCCGCATCC 33045 || |||||||| | |||||||| | ||| | ||||| || ||||||||| ||||||| | Sbjct 399 AGTCCGACCAGGTGCTGGTCGGCATCAACAAGACCCGGCGCGCCTACAACGGCCGCATGC 340 Query 33046 GCGAGCTCCGAGGAGCCGCTCAGGCG--TACCCGCACCAGGGAGACAAGCTGGTCTGCCT 33103 || ||| | | ||| || |||| | ||| | || || ||||| || ||||| Sbjct 339 GCACGCT--GCTGGGCCATTCCGGCGACAAGCCGGAGATCGGCGAGAAGCTCGTGTGCCT 282 Query 33104 GCGGAACAACCACGACTCTGGCCTGCTGAACGGCTCGCTCTGGACGGTGGAAACCGCGCT 33163 ||| ||| || | | |||||||| |||||| ||||| | | || || | Sbjct 281 GCGCAACGACAAGAAGAAGGGCCTGCTCAACGGCGGCACCTGGA---TCGTCACGGCCGT 225 Query 33164 CGACTCCGGGGACGGCTTC--GTT-GCGCTCGAGC-TC---CTGGGCGAGGAAGGCCAGA 33216 | || ||| |||| | ||| || || ||| || | || ||||| ||| || Sbjct 224 CCACGCCGACCGCGGCGCCAAGTTCTCGTTC-AGCGTCAGGCCGGAGGAGGAGGGCAAGC 166 Query 33217 G-AGTCGCGTCCTCCGCCCACG-GCTGCCTG--TTCCACGGACAGAACCCCGA-GTGG-- 33269 | | | ||| | | || |||||| | ||| || || | ||| | || Sbjct 165 GCAAGCCCGTGC-GGGTGGGCGTGCTGCCGGCCTTCTTCG---AGGGGCGCGACGAGGAC 110 Query 33270 ------TACGAGAAGAAG---GAGGCGGACGAGTTCGACTACGGCTACGCCCTGACCGTG 33320 |||| | ||||| ||| ||||| ||||||||| ||||||||| ||||| || Sbjct 109 ATCCCCTACGCGCAGAAGCGCGAGTCGGACCAGTTCGACTTCGGCTACGCGCTGACGGTC 50 Query 33321 CACAAGAGCCAGGGCTCCCAGTGGGACGACGTGCTCGTCATCGACGAG 33368 |||||| |||||||| ||||||||||||||| | | |||||||| Sbjct 49 CACAAGGCGCAGGGCTCGCAGTGGGACGACGTGGTGCTGTTCGACGAG 2 Score = 107 bits (118), Expect = 7e-19 Identities = 125/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 32334 TTCCGCCTGTTCGGCTACGCCGGAACTGGCAAGACCACGCTGGCCCGGCACATCGCCGAG 32393 ||||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||| Sbjct 937 TTCCGCCTGTTCGGCTATGCCGGCACCGGCAAGACCACGCTGGCGAAGCAGATCGCCGAG 878 Query 32394 GGCATCGAC-GGCACCGTTCTCTTCGCCGCCCCGACCGGGAAGGCCGCCTACGTCCTGAA 32452 | | || | ||| || ||||| ||| || || ||||||||| || ||||| Sbjct 877 GAC-GCGCCGGGCGAGGTCGCCTTCGGGGCCTACACGGGCAAGGCCGCCCTGGTGCTGAA 819 Query 32453 GACGAAGGGCTGCCCGAACACCGGCACCATCCACCAGCTGATCTAC 32498 | | |||||||||| | | || ||||||||| | |||||||| Sbjct 818 GTCCAAGGGCTGCCGGGGCGCCTCCACCATCCATTCGATGATCTAC 773 >seq89734 Length=855 Score = 134 bits (148), Expect = 5e-27 Identities = 321/479 (67%), Gaps = 10/479 (2%) Strand=Plus/Plus Query 32679 AAGGCGAAGCTCCTGATCGTGGACGAGTCCTCCATGGTGGA---CGAGCAGGTGGGAGAA 32735 ||||| | ||| | || | ||||||| ||| ||||| || ||| | | || | Sbjct 189 AAGGCCGACCTCATCGTCATCGACGAGTGCTCGATGGTCGATTCCGACC---TCGGCCAC 245 Query 32736 GACCTGCTGTCCTTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCC 32795 ||||||||||| |||| |||| | || | || |||||||| || ||||||||||| Sbjct 246 GACCTGCTGTCGTTCGACAAGCCGGTGCTGGTGCTCGGCGACCCGGCGCAGCTGCCGCCG 305 Query 32796 GTCATGGGGGCCGGGTTCTTCACCAAGCAGAAGGCCGACTTCCTCCTGACCGACATCCAC 32855 || || | ||| ||||||||| || || ||||| | | |||||||| ||||| Sbjct 306 GTGCGCGGCGGCGGCTTCTTCACCGAGGCCGAGCCCGACGTGATGCTGACCGAGGTCCAC 365 Query 32856 CGACAGGCCCGCGACAACCCGATCATCGAGATGTCTCGCATCGTCCGCGAAGGCGGTGCC 32915 || |||||| ||| |||||||| | ||| | | || ||||| ||||| Sbjct 366 CGCCAGGCCAAGGACGACCCGATCGTGCGCATGGCGATGACGGTGCGCGAGGGCGGCCGG 425 Query 32916 CTGTCCCTGGGTCGCTACGGGGAGAGCGAGGTGGT-GCGCATGGCTGACTTCCAGCGCGA 32974 || | || || ||||| | ||| ||||| ||| || | | || | | ||| Sbjct 426 CTCGCGCTCGGCGAGTACGGCGCCAGCCGCGTGGTCTCGCGCCGC-GCCATCGA-CCCGA 483 Query 32975 -CTGGGTGTTCCAGGCCGACCAGATCCTGGTCGGGAAGAACGACACCCGCCGTGCCTACA 33033 | |||| || | ||||||| | ||||| || | |||| | ||||||||| ||||| Sbjct 484 CCCAGGTGCTCGACTGCGACCAGGTGCTGGTGGGCATGAACAAGACCCGCCGTCTCTACA 543 Query 33034 ACCGCCGCATCCGCGAGCTCCGAGGAGCCGCTCAGGCGTACCCGCACCAGGGAGACAAGC 33093 || | || | || |||||| || || | || ||| ||| || |||| Sbjct 544 ACGGGCGGCTGCGGGAGCTCGCCGGCCACGTCGACCCGATGCCGGCGGTGGGCGAGAAGC 603 Query 33094 TGGTCTGCCTGCGGAACAACCACGACTCTGGCCTGCTGAACGGCTCGCTCTGGACGGTG 33152 ||||||||||||| ||| ||| | | |||||||| ||||||||| |||||||||| Sbjct 604 TGGTCTGCCTGCGCAACGACCGCACCAAGGGCCTGCTCAACGGCTCGACCTGGACGGTG 662 Score = 82.4 bits (90), Expect = 3e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 32374 TGGCCCGGCACATCGCCGAGGGCATCGACGGCACCGTTCTCTTCGCCGCCCCGACCGGGA 32433 ||||||| | ||||||||| | | |||||||| | || | |||| |||| ||||| | Sbjct 1 TGGCCCGCCGCATCGCCGACGACGTCGACGGCTCGGTGGTGTTCGGCGCCTTCACCGGCA 60 Query 32434 AGGCCGCCTACGTCCTGAAGACGAAGGGCTGCCCGAACACCGGCACCATCCACCAGCTGA 32493 |||| |||| || || ||||||||||| | || ||| || |||||| ||||| Sbjct 61 AGGCGGCCTCGGTGATGCGCCAGAAGGGCTGCCAGGACGCCGCGACGATCCACTCGCTGA 120 Query 32494 TCTACACCCCGAAGGAGA 32511 ||||| | | ||||||| Sbjct 121 TCTACCGCACCAAGGAGA 138 >seq79385 Length=1039 Score = 87.8 bits (96), Expect = 7e-13 Identities = 178/260 (68%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 5912 TCCAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGCTCGGCTTCCTGC 5971 ||||||| || || | | || || || || ||||| | ||| ||| |||||||||| Sbjct 478 TCCAGCGGCTGATCCTGTCGCGCCCGGCGGTGGAGGCGGGCGAGCGGCTGGGCTTCCTGC 419 Query 5972 CCGGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGACGCGGTGATCG 6031 ||||| || | |||||| | | ||||| ||| |||| || |||||| | || Sbjct 418 CCGGCGACATGAAGGAGAAGGTCGACCCCTATCTCCGCCCGCTGTACGACGCGCTCTACG 359 Query 6032 ACCTGGTCGGCCCGACGATGACG--AAGCGCCTCCTCGAGTCGCGCCAGCTGGAGGTCGC 6089 || || | ||||| ||| | | |||| | ||| ||| || || | ||| |||| Sbjct 358 ACATG--CTGCCCGCCGAGCAGGTCGAGCGGCGGATCGCATCG-GCGAGATCGAGATCGC 302 Query 6090 CCCGCTGGCCTACATGCGAGGCCGGACGTTCAACGACACGTACATCGTCGCTGACGAGAT 6149 || | |||| |||||| ||||| ||| | ||| ||| |||| || |||||| Sbjct 301 GCCCATCGCCTTCATGCGCGGCCGCACGCTGGCGGACGCGTTCATCATCCTCGACGAGGC 242 Query 6150 GCAGAACGCCAC-CCCGCGC 6168 ||||||| |||| ||||||| Sbjct 241 GCAGAACACCACGCCCGCGC 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191184229301120