Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028779.1 Length=43680 Score E Sequences producing significant alignments: (Bits) Value seq116094 86.0 2e-12 >seq116094 Length=536 Score = 86.0 bits (94), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 10/152 (7%) Strand=Plus/Plus Query 31799 TGCACGCAGACCGACCCCGAGGTGTTCTTCCCCGAAAAGGGCG----AACCCG-TTGGCC 31853 ||| | |||||||||||||||| |||||||||||| ||||||| ||||| |||| Sbjct 40 TGCGCCCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGGCGGCTCGACCCGCGAGGCC 99 Query 31854 CCGCTCGTGAGATCTGCAAGCGGTGCGATGTGCGGCAACAGTGCCGGGACATCGCGATTG 31913 || || ||||| || ||||| || || || |||||| ||| |||| | | Sbjct 100 AAGCGCG-----TCTGCCAGTCCTGCGAGGTCCGCCAGGAGTGCCTGGAGTACGCGCTGG 154 Query 31914 CCCACGATGAAGAGTTCGGCATCTGGGGCGGT 31945 | |||| || ||||||||||||||||||| Sbjct 155 GCAACGACGAGCGGTTCGGCATCTGGGGCGGT 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139432856536756