Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028784.1 Length=51409 Score E Sequences producing significant alignments: (Bits) Value seq81249 129 2e-25 seq103996 89.7 2e-13 seq37623 89.7 2e-13 seq105772 84.2 7e-12 >seq81249 Length=1001 Score = 129 bits (142), Expect = 2e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 41691 GTAGAGCCACGCGATCGAGTCGCGGATCTCGAAGCCCGCGTCCTCGATGGCCACGGTCAG 41750 ||||||||||||||||||||||||||||||||| || ||||||||||| | | | || Sbjct 1 GTAGAGCCACGCGATCGAGTCGCGGATCTCGAATCCGGCGTCCTCGATTCCGGCAGCGAG 60 Query 41751 CCGGTGCCAGGTGCGGGAGCCGCCGAAGGCGAGCAGGTGCCCACCGGGCTTGAGGACCCG 41810 ||||| ||||||| | |||||||||||||| || ||||| ||||| ||||||| || Sbjct 61 GCGGTGGAAGGTGCGAGTACCGCCGAAGGCGAGGAGCTGCCCGCCGGGTTTGAGGATGCG 120 Query 41811 CAGGCA 41816 ||||| Sbjct 121 GAGGCA 126 >seq103996 Length=666 Score = 89.7 bits (98), Expect = 2e-13 Identities = 54/56 (96%), Gaps = 1/56 (2%) Strand=Plus/Minus Query 2438 GCTCAATTTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 2493 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 453 GCTCAATT-GGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 399 >seq37623 Length=2350 Score = 89.7 bits (98), Expect = 2e-13 Identities = 54/56 (96%), Gaps = 1/56 (2%) Strand=Plus/Minus Query 2438 GCTCAATTTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 2493 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1358 GCTCAATT-GGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 1304 >seq105772 Length=647 Score = 84.2 bits (92), Expect = 7e-12 Identities = 53/56 (95%), Gaps = 1/56 (2%) Strand=Plus/Minus Query 2438 GCTCAATTTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 2493 |||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 553 GCTCAATT-GGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164126421180278