Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028807.1 Length=43150 Score E Sequences producing significant alignments: (Bits) Value seq35922 279 1e-70 >seq35922 Length=2553 Score = 279 bits (308), Expect = 1e-70 Identities = 337/459 (73%), Gaps = 0/459 (0%) Strand=Plus/Plus Query 5534 CATGGCACTGACTCTCGTGGAGGCGGCCAAGCTCTCCCAGGACGACCTCCAGCGAGGCGT 5593 ||||||| | || ||| | |||| || ||| || | ||||||| ||| ||||| Sbjct 1669 CATGGCAGTCACCCTCATCCAGGCCGCGGCGCTGTCGGACAACGACCTGCAGACCGGCGT 1728 Query 5594 CCTGGAGATCTTCGTTCAGGAGTCCAGCATCCTGGACCGTATCCCGTTCCTCACCATAGA 5653 | |||| ||| | |||| ||| | | || ||||| |||| ||||| || | Sbjct 1729 GATCGAGACGTTCATCCAGGCGTCTCCCGTGCTCGACCGCGCCCCGATCCTCGAGATCCA 1788 Query 5654 GGGCAACGCGTACGCGTACAATGAGGAGGCCAGCCTCCCGGGCGTGGAGTTCCGTTCGGT 5713 ||||||||||||||||||||| |||||| | |||||| ||||| | |||||| || Sbjct 1789 GGGCAACGCGTACGCGTACAACACGGAGGCGACCCTCCCCGGCGTCGCGTTCCGCGGCGT 1848 Query 5714 GAACGAGGGTTACGCGGAGTCGACCGGCACCGTAAACCCCAAGTCGGAGCGGCTGGTCAT 5773 |||||||| ||| ||| || ||||| || |||| | | ||| ||| || || Sbjct 1849 GAACGAGGCGTACATCGAGAGCACGGGCACGGTCAACCAGCTGACCGAGTCGCTCGTGAT 1908 Query 5774 CCTCGGTGGCGACGCCGACGTGGACACCTTCATCGTCAAGACCCGGGGCAACCTCAACGA 5833 ||| ||||||||||||||||| ||| |||||||| |||| || || ||||| ||||| Sbjct 1909 CCTGGGTGGCGACGCCGACGTCGACCGGTTCATCGTGCAGACGCGCGGGAACCTGAACGA 1968 Query 5834 CCAGCGGGCCATCCAGACCCGCATGAAGGTCAAGGCCGTCTCGTACAAGTTCCAGGACCA 5893 |||||| || | ||||| | ||||||| ||||||| || ||||||||||||||| Sbjct 1969 CCAGCGCGCGACGCAGACGGCCCTGAAGGTGAAGGCCGCGTCCTACAAGTTCCAGGACTC 2028 Query 5894 TTTCTTCAACGGTGACACGGAGGTGGACCCGAAGGGCTTCGACGGCCTCAAGAAGCGCCT 5953 ||||||||||| ||| | || || |||||||||||||||||||| ||||||||||| Sbjct 2029 CTTCTTCAACGGCGACGTGACCGTCGAGCCGAAGGGCTTCGACGGCCTGAAGAAGCGCCT 2088 Query 5954 CACCGGTGCCCAGGTCCTGGCCGCCGACGCCAACGGCAT 5992 | ||| | |||||| | | ||||| | | ||||| || Sbjct 2089 CGTCGGCGGGCAGGTCATCGACGCCGGCACGAACGGGAT 2127 Score = 100 bits (110), Expect = 8e-17 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 6189 AACGGCATCGCCCTCCTGGACCCGGGTCAGACCCCCGCCGGCGCGGACATCCTCCCGATG 6248 ||||| ||| | |||| |||||||| | | || ||| ||| | ||||| ||| | Sbjct 2336 AACGGGATCCCGTTCCTCGACCCGGGCGACAACCTCGCGGGCTCCCCGATCCTGCCGCAG 2395 Query 6249 ACCGAGACCCAGGGCACCGCCACCGATGCCTCCAGCGTCTACGCGGTCAAGTTCGGCCAG 6308 |||||||| |||||| || | | || || ||| ||||||| || |||| ||||||| Sbjct 2396 ACCGAGACGCAGGGCTCCTCGAGCGCGGCGTCCTCGATCTACGCCGTGAAGTACGGCCAG 2455 Query 6309 GACGAGACCGACCAGGCCGTTACCGGTCTGACCAACGGTGGCGTCACCGTGCGGGACCTG 6368 ||||||||||||| | ||| ||| || ||||||| || || || ||||| Sbjct 2456 GACGAGACCGACCGCGGCGTCACCCTGCTCGCCAACGGCGGGATCCAGGTCGACGACCTC 2515 Query 6369 GGCGAGCTGGACTCCAAGCCGGTGTACCGCACCCG 6403 || |||| | || ||||| |||||| ||||| Sbjct 2516 GGGATGCTGCAGTCGCAGCCGACGTACCGGACCCG 2550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137739547019216