Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_028807.1
Length=43150
Score E
Sequences producing significant alignments: (Bits) Value
seq35922 279 1e-70
>seq35922
Length=2553
Score = 279 bits (308), Expect = 1e-70
Identities = 337/459 (73%), Gaps = 0/459 (0%)
Strand=Plus/Plus
Query 5534 CATGGCACTGACTCTCGTGGAGGCGGCCAAGCTCTCCCAGGACGACCTCCAGCGAGGCGT 5593
||||||| | || ||| | |||| || ||| || | ||||||| ||| |||||
Sbjct 1669 CATGGCAGTCACCCTCATCCAGGCCGCGGCGCTGTCGGACAACGACCTGCAGACCGGCGT 1728
Query 5594 CCTGGAGATCTTCGTTCAGGAGTCCAGCATCCTGGACCGTATCCCGTTCCTCACCATAGA 5653
| |||| ||| | |||| ||| | | || ||||| |||| ||||| || |
Sbjct 1729 GATCGAGACGTTCATCCAGGCGTCTCCCGTGCTCGACCGCGCCCCGATCCTCGAGATCCA 1788
Query 5654 GGGCAACGCGTACGCGTACAATGAGGAGGCCAGCCTCCCGGGCGTGGAGTTCCGTTCGGT 5713
||||||||||||||||||||| |||||| | |||||| ||||| | |||||| ||
Sbjct 1789 GGGCAACGCGTACGCGTACAACACGGAGGCGACCCTCCCCGGCGTCGCGTTCCGCGGCGT 1848
Query 5714 GAACGAGGGTTACGCGGAGTCGACCGGCACCGTAAACCCCAAGTCGGAGCGGCTGGTCAT 5773
|||||||| ||| ||| || ||||| || |||| | | ||| ||| || ||
Sbjct 1849 GAACGAGGCGTACATCGAGAGCACGGGCACGGTCAACCAGCTGACCGAGTCGCTCGTGAT 1908
Query 5774 CCTCGGTGGCGACGCCGACGTGGACACCTTCATCGTCAAGACCCGGGGCAACCTCAACGA 5833
||| ||||||||||||||||| ||| |||||||| |||| || || ||||| |||||
Sbjct 1909 CCTGGGTGGCGACGCCGACGTCGACCGGTTCATCGTGCAGACGCGCGGGAACCTGAACGA 1968
Query 5834 CCAGCGGGCCATCCAGACCCGCATGAAGGTCAAGGCCGTCTCGTACAAGTTCCAGGACCA 5893
|||||| || | ||||| | ||||||| ||||||| || |||||||||||||||
Sbjct 1969 CCAGCGCGCGACGCAGACGGCCCTGAAGGTGAAGGCCGCGTCCTACAAGTTCCAGGACTC 2028
Query 5894 TTTCTTCAACGGTGACACGGAGGTGGACCCGAAGGGCTTCGACGGCCTCAAGAAGCGCCT 5953
||||||||||| ||| | || || |||||||||||||||||||| |||||||||||
Sbjct 2029 CTTCTTCAACGGCGACGTGACCGTCGAGCCGAAGGGCTTCGACGGCCTGAAGAAGCGCCT 2088
Query 5954 CACCGGTGCCCAGGTCCTGGCCGCCGACGCCAACGGCAT 5992
| ||| | |||||| | | ||||| | | ||||| ||
Sbjct 2089 CGTCGGCGGGCAGGTCATCGACGCCGGCACGAACGGGAT 2127
Score = 100 bits (110), Expect = 8e-17
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 6189 AACGGCATCGCCCTCCTGGACCCGGGTCAGACCCCCGCCGGCGCGGACATCCTCCCGATG 6248
||||| ||| | |||| |||||||| | | || ||| ||| | ||||| ||| |
Sbjct 2336 AACGGGATCCCGTTCCTCGACCCGGGCGACAACCTCGCGGGCTCCCCGATCCTGCCGCAG 2395
Query 6249 ACCGAGACCCAGGGCACCGCCACCGATGCCTCCAGCGTCTACGCGGTCAAGTTCGGCCAG 6308
|||||||| |||||| || | | || || ||| ||||||| || |||| |||||||
Sbjct 2396 ACCGAGACGCAGGGCTCCTCGAGCGCGGCGTCCTCGATCTACGCCGTGAAGTACGGCCAG 2455
Query 6309 GACGAGACCGACCAGGCCGTTACCGGTCTGACCAACGGTGGCGTCACCGTGCGGGACCTG 6368
||||||||||||| | ||| ||| || ||||||| || || || |||||
Sbjct 2456 GACGAGACCGACCGCGGCGTCACCCTGCTCGCCAACGGCGGGATCCAGGTCGACGACCTC 2515
Query 6369 GGCGAGCTGGACTCCAAGCCGGTGTACCGCACCCG 6403
|| |||| | || ||||| |||||| |||||
Sbjct 2516 GGGATGCTGCAGTCGCAGCCGACGTACCGGACCCG 2550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137739547019216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |