Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028810.1 Length=52357 Score E Sequences producing significant alignments: (Bits) Value seq81249 145 3e-30 >seq81249 Length=1001 Score = 145 bits (160), Expect = 3e-30 Identities = 206/283 (73%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 40316 GTAGAGCCACGCGATCGAGTCGCGGACCTCGAACCCGGCGTCCTCGATGGCCACGGTCAG 40375 |||||||||||||||||||||||||| |||||| |||||||||||||| | | | || Sbjct 1 GTAGAGCCACGCGATCGAGTCGCGGATCTCGAATCCGGCGTCCTCGATTCCGGCAGCGAG 60 Query 40376 CCGGTGCCAGGTGCGGGACCCGCCGAAGGCGAGCAGGTGCCCACCGGGCTTGAGGACCCG 40435 ||||| ||||||| | |||||||||||||| || ||||| ||||| ||||||| || Sbjct 61 GCGGTGGAAGGTGCGAGTACCGCCGAAGGCGAGGAGCTGCCCGCCGGGTTTGAGGATGCG 120 Query 40436 CAGGCATT--GC-TCCCACATCTCG-AC-----GTCGAAAGCGATGCCCG---AGCCGTC 40483 ||||| | || ||||| |||| || | ||| || | | ||| || Sbjct 121 GAGGCACTCGGCGGCCCACTGCTCGCACCAGTGCTGGAACTCGCCGGGGGTGTAGCGATC 180 Query 40484 CCACTTCTTGCTCATGAATCCCAGTTCGTAGGGCGGGTCGGTGACGATGGAGTCGACGCT 40543 ||| | || |||||| | || |||||||||| |||||||||| || || ||||| Sbjct 181 CCAGCCGTGGCCCATGAAGTCGAGGGCGTAGGGCGGATCGGTGACGACGGCGTGCACGCT 240 Query 40544 GTCGTCTTCTAG-TTCGGTGAGGATGTCTCGGCAGTCCCCGAG 40585 | |||| || ||| | ||||| ||| ||||||| ||||| Sbjct 241 GCCGTCGGGCAGCTTCCG-GAGGACGTCGAGGCAGTCGCCGAG 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167155208770142