Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028813.1 Length=57766 Score E Sequences producing significant alignments: (Bits) Value seq81249 136 1e-27 seq116094 98.7 4e-16 seq78850 96.9 1e-15 >seq81249 Length=1001 Score = 136 bits (150), Expect = 1e-27 Identities = 126/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 45468 GTTTCAGCAGTGGTGCGCGCAGTGGGCGGCTGAGTGCTTGCGTGTGTTGAAACCGGGCGG 45527 ||| ||||| ||||||| ||||||||| || |||||| | || | | ||||| ||||| Sbjct 160 GTTCCAGCACTGGTGCGAGCAGTGGGCCGCCGAGTGCCTCCGCATCCTCAAACCCGGCGG 101 Query 45528 GCACATGTTGGCGTTCGGCGGTTCGCGCACCTGGCACCGGCTGGCGGCGGCGATCGAGGA 45587 ||| | | || ||||||||| | ||||||| ||||| || || || | |||||||| Sbjct 100 GCAGCTCCTCGCCTTCGGCGGTACTCGCACCTTCCACCGCCTCGCTGCCGGAATCGAGGA 41 Query 45588 CGCCGGGTTTGAGATCCGGGACTCCATCGCGTGGCTGTAC 45627 |||||| || |||||||| ||||| ||||||||||| ||| Sbjct 40 CGCCGGATTCGAGATCCGCGACTCGATCGCGTGGCTCTAC 1 >seq116094 Length=536 Score = 98.7 bits (108), Expect = 4e-16 Identities = 128/176 (73%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 39811 GCGTTGTGCTCCCAGGTCGATCCCGAGCTGTTCTTCCCCGAAAAGGGAGGAAACGCGAAA 39870 ||| ||||| ||||| ||| |||||| |||||||||||| ||||| || | ||| Sbjct 34 GCGCTGTGCGCCCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGGCGG---CTCGACC 90 Query 39871 CCCG---CAAAGCGGATCTGCGGTATGTGCGACGTCCGGGACGAATGCCTTCAGTGGGCG 39927 | || | ||||| ||||| ||||| ||||| | || ||||| ||| ||| Sbjct 91 CGCGAGGCCAAGCGCGTCTGCCAGTCCTGCGAGGTCCGCCAGGAGTGCCTGGAGTACGCG 150 Query 39928 CTGGACAACAACGAACAGTTCGGCATCTTCGGCGGCCTGTCCGAGCGTGAACGCCG 39983 |||| |||| |||| | ||||||||||| ||||| || ||||| || ||||| || Sbjct 151 CTGGGCAACGACGAGCGGTTCGGCATCTGGGGCGGTCTCTCCGAACGCGAACGTCG 206 >seq78850 Length=1053 Score = 96.9 bits (106), Expect = 1e-15 Identities = 127/174 (73%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 39812 CGTTGTGCTCCCAGGTCGATCCCGAGCTGTTCTTCCCCGAAAAGGGAGGAA--ACGCGAA 39869 || ||||| | ||| |||||| ||| ||||||||| |||||||| ||| ||||| Sbjct 549 CGCTGTGCGCGCAGACCGATCCTGAGGCGTTCTTCCCGGAAAAGGGTGGATCGACGCGCG 608 Query 39870 ACCCGCAAAGCGGATCTGCGGTATGTGCGACGTCCGGGACGAATGCCTTCAGTGGGCGCT 39929 | || |||||||||||| |||||| ||| | | ||||| ||| ||||| Sbjct 609 AGGCG--AAGCGGATCTGCACGTCGTGCGAGGTCAAGTCGCAGTGCCTCGAGTACGCGCT 666 Query 39930 GGACAACAACGAACAGTTCGGCATCTTCGGCGGCCTGTCCGAGCGTGAACGCCG 39983 | | ||| |||| | |||||||||| |||||||| |||||||| || ||||| Sbjct 667 GCAGAACGACGAGCGCTTCGGCATCTGGGGCGGCCTCTCCGAGCGCGAGCGCCG 720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184436550619904