Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028832.1 Length=61511 Score E Sequences producing significant alignments: (Bits) Value seq37323 178 5e-40 seq78026 172 2e-38 seq78025 134 5e-27 seq103996 93.3 2e-14 seq37623 93.3 2e-14 seq63746 89.7 2e-13 seq105772 87.8 7e-13 >seq37323 Length=3330 Score = 178 bits (196), Expect = 5e-40 Identities = 484/726 (67%), Gaps = 29/726 (4%) Strand=Plus/Minus Query 54950 TGGCGCGAACAGCTCGGAACACTCGGCGGCGGCAACCATTTCATTGAACTGTGCCTCGAC 55009 ||||| | ||||| || | |||||| |||||||||| ||||| || | | | ||||| Sbjct 1900 TGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCGTCGAC 1841 Query 55010 CAGCTCGACCGCGTCTGGCTGTTCCTGCATTCCGGGTCTCGTGGTGTCGGCAACAAGATC 55069 || ||| || |||||||||||||| || || || || || |||||| |||| Sbjct 1840 GAGACCGATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAACCGGATC 1781 Query 55070 GCGCAGAAACACATCAAGGCCGCCCAGAACGCC-TG-CGAGG----GCATCGAACTGCCG 55123 || ||| | |||||||||| ||| ||| || || || || | ||| | ||||| Sbjct 1780 GCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGCTGTGGATCCAGCTGCCC 1721 Query 55124 TCCAAGGATCTGGCGTACCTCACCGAAGGCACACCCCAATTCTACGAGTACCTACGTGAA 55183 | || ||||| ||||| || ||||| || || ||| || ||| | ||| Sbjct 1720 GACCGCGACCTGGCCTACCTGGTGGAGGGCACGCCGCAGTTCGACCGCTACATCGCCGAA 1661 Query 55184 CTGCATTGGGCGCAACGATTCGCG-TACTCGAACCGCGCCGAAATGATGGACCGGTTCGC 55242 |||| |||||||| || ||||| | || |||||||| || ||||||||||| ||| Sbjct 1660 CTGCGATGGGCGCAGCGCTTCGCCCTGCT-GAACCGCGAGGAGATGATGGACCGCGTCGT 1602 Query 55243 GCGCGCATTCGCGAACTGGATCGGCACACCCGTCGACGACGTCTCAGCGTTCATCGCCGA 55302 |||| || | | |||| | || || || ||| | ||| || Sbjct 1601 GCGCCAGGTCTCCGA--------GCACCTCGGTG--CGGCGGTGCAGG----AGCGC-GA 1557 Query 55303 AACCATCAACACCCACCACAACTACACCGAGCAGGAAGAACACGGCGGCCGGTTCGTGTG 55362 |||||| ||||||||||| ||| ||||||| ||| |||||| ||| || Sbjct 1556 GCGGATCAACTGCCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCCGTGACGTCTG 1497 Query 55363 GCTCACCCGCAAAGGCGCCATCGACGCACACGAAGGTGTGCGTGGCCTCATCCCCGGCAG 55422 ||| ||||||| ||||||||| | || | | || | | ||||| |||||||| Sbjct 1496 GCTGTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGGCGACCTCGGCCTGATCCCCGGGTC 1437 Query 55423 CATGGGCACCTGCTCATACGTCGTCACCGGCAAAGGCAACCCCGAAGG-GTTGTGCTCAG 55481 ||||| ||| ||| ||||| || || ||| ||| || || | | ||| Sbjct 1436 GATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGCGACCG-GATGGCGCTCGACTCGT 1378 Query 55482 CACCGCACGGCGCTGGCCGCC-GCTACTCCCGCACGAAAGCCCGGAAACTGTTCACCGCA 55540 | ||||||||||| || ||| ||| || || |||| || ||||| |||||| Sbjct 1377 CGCCGCACGGCGCCGGGCGCGTGCTG-TCGCGGTCGAAGGCGCGGAAGGCGTTCACGATC 1319 Query 55541 GACGATTTG-GCGGACCGTATGCGCGGCATCGAATACCGGCACGGCGACGCGTGGATCGA 55599 || | || ||| || ||| |||||||| | |||| || ||| || | | || Sbjct 1318 GAGCAGCTGCGCGAGGCG-ATGACGGGCATCGAGTTCCGGGACACCGAGGCCTTCCTGGA 1260 Query 55600 CGAAATCCCCGACGCGTACAAGCCGATCGACGTCGTCATGCACGACGCCGCCGAGCTGGT 55659 ||| ||||| | || ||||||||||||||| || ||| |||||| ||||| ||||| Sbjct 1259 CGAGATCCCGCAGGCCTACAAGCCGATCGACCAGGTGATGGCCGACGCGGCCGACCTGGT 1200 Query 55660 CACCGT 55665 |||||| Sbjct 1199 CACCGT 1194 Score = 120 bits (132), Expect = 1e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 54518 ATCAACCCCCAACTCGTCAACTTCGCCAGCGAAATCGACGACGACACACTGAAGCAAGCC 54577 |||| | ||| ||| || || ||||||| |||| |||| ||| || |||| || Sbjct 2692 ATCAGCTCCCGGCTCTACAGCTGGGCCAGCGTGCTCGAGGACGTCACGCTCGAGCAGGCG 2633 Query 54578 GAACAAACCGCCAGCATGCCGTTCGTGTATCCGCACGTCGCACTCATGCCCGACGCACAT 54637 | | || | | |||||| ||| | | |||||| | || || ||||||||||| || Sbjct 2632 CAGCGCACGTCGACCATGCCCTTCATCCACCCGCACCTGGCCCTGATGCCCGACGCGCAC 2573 Query 54638 TTCGGCAAAGGCAGCTCGGTCGGCACAGTCATCCCCACCCAAGGCGCCGTCATCCCGGCC 54697 | || ||| | |||||||| | || ||||| || | |||||||| || |||||| Sbjct 2572 CTGGGGCTCGGCGCCACGGTCGGCTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCC 2513 Query 54698 GCCGTCGGCGTCGACATCGGCTGCGGCATGATCGCAGCCCGCAC 54741 || || || || |||||||||||||| |||||||| | |||||| Sbjct 2512 GCGGTGGGGGTGGACATCGGCTGCGGGATGATCGCGGTCCGCAC 2469 >seq78026 Length=538 Score = 172 bits (190), Expect = 2e-38 Identities = 282/399 (71%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 55307 ATCAACACCCACCACAACTACACCGAGCAGGAAGAACACGGCGGCCGGTTCGTGTGGCTC 55366 |||||| ||||||||||||||||| |||||| | ||| |||| | ||| |||||| Sbjct 55 ATCAACTGCCACCACAACTACACCGCGCAGGAGAAGCACTTCGGCAAGACCGTCTGGCTC 114 Query 55367 ACCCGCAAAGGCGCCATCGACGCACACGAAGGTGTGCGTGGCCTCATCCCCGGCAGCATG 55426 ||||||| || || |||||||| || || || || || |||||||| ||| Sbjct 115 TCCCGCAAGGGGGCGATCGACGCGAGCGCCGGCCGGCCCGGGCTGATCCCCGGGTCGATG 174 Query 55427 GGCACCTGC-TCATACGTCGTCACCGGCAAAGGCAACCCCGAAGGGTTGTGCTCAGCA-- 55483 || | | || || ||||||||| |||| |||||||| | | | || | ||||| Sbjct 175 GG-AGCGGCGTCGTACGTCGTCGAGGGCAGGGGCAACCCGGTCGCGCTG--CACAGCAGC 231 Query 55484 CCGCACGGCGCTGGCCGCCGCTACTCCCGCACGAAAGCCCGGAAACTGTTCACCGCAGAC 55543 |||||||| || || ||| ||||| || | || || || | |||||| ||| Sbjct 232 CCGCACGGGGCGGGGCGCGAGTACTCGCGGTCCGCGGCGCGCAAGCGCTTCACCCGTGAC 291 Query 55544 GATTTGGCGGACCGTATGCGCGGCATCGAATACCGGCACGGCG-ACGCGTGGATCGACGA 55602 ||| | | | || ||| ||||||||| | ||| | || |||||| ||||||| Sbjct 292 GATCTCGACGCGCGCATGACCGGCATCGAGTGG-GGCCGGTCGGACGCGTTCCTCGACGA 350 Query 55603 AATCCCCGACGCGTACAAGCCGATCGACGTCGTCATGCACGACGCCGCCGAGCTGGTCAC 55662 | |||||||||||||||| |||||||| |||||| |||||| ||||| || |||| Sbjct 351 ACACCCCGACGCGTACAAGGACATCGACGTGGTCATGGCCGACGCGGCCGACCTCGTCAG 410 Query 55663 CGTCGACGCCGAGCTGCGGCAAATCCTGAACGTCAAGGG 55701 |||| | |||||| || ||| | ||||||||||| Sbjct 411 CGTCCGGCACACGCTGCGACAGATCGTCAACGTCAAGGG 449 >seq78025 Length=530 Score = 134 bits (148), Expect = 5e-27 Identities = 301/437 (69%), Gaps = 40/437 (9%) Strand=Plus/Plus Query 54666 TCATCCCCACCCAAGGCGCCGTCATCCCGGCCGCCGTCGGCGTCGACATCGGCTGCGGCA 54725 |||||||||| | ||||| |||||||||| || ||||||||||||||||| ||||| | Sbjct 1 TCATCCCCACGCTGGGCGCGATCATCCCGGCGGCGGTCGGCGTCGACATCGGGTGCGGGA 60 Query 54726 TGATCGCAGCCCGCACCACCTACACCGCGCAAGACCTCGACGACCGCATGGCCGCCACCG 54785 |||| || | ||||||| | | |||||| | || ||| | || || || |||| Sbjct 61 TGATGGCCGTCCGCACCCCGTTCACCGCCGAGGAGTTCG----CAGC--GGTCG--ACCG 112 Query 54786 GGCATGGGCTGGACACGCTGCGCGCCTCGATTGAATCCGC--CATCCCCATGTCGGCCGG 54843 || ||| |||| |||| | || | |||| | | || ||||||| || Sbjct 113 CGC-------GGAA---CTGCACGCCGCCATC--AGCCGCACCGTGCCGCTGTCGGCGGG 160 Query 54844 TGGATACAACAAACGGC-TCGACCGGTACCCGTTCACCGCCGCGCGCATCGTCGAACTCG 54902 | | ||||||| || | ||||| || ||| | | ||||| ||||| | || | Sbjct 161 TCGCTACAACAC-CGTCGTCGAC-GGCACCG-----CGGTCGCGCACATCGAGGCCCTGG 213 Query 54903 A--CCATCGCGCGTTCGAGCTGAACATCGACCTGACGCACTCGC-CGAAATGGCGCGAAC 54959 | ||| ||| | || | || || | || ||||| |||| | ||||| | Sbjct 214 AGGCCAAGGCGGG--CGTG--GAGCA--GGCC-GACGCGATCGCGCCGGGTGGCGGCTGC 266 Query 54960 AGCTCGGAACACTCGGCGGCGGCAACCATTTCATTGAACTGTGCCTCGACCAGCTCGACC 55019 |||| || | ||||| ||||||||| ||||| || | |||||||| ||||||||| Sbjct 267 AGCTGGGTTCGCTCGGTTCCGGCAACCACTTCATCGAGGTCAGCCTCGACGAGCTCGACC 326 Query 55020 GCGTCTGGCTGTTCCTGCATTCCGGGTCTCGTGGTGTCGGCAACAAGATCGCGCAGAAAC 55079 | || |||||||||||||| || || || || || || ||||||||| ||||| | Sbjct 327 GGGTGTGGCTGTTCCTGCACTCGGGCTCGCGCGGGGTGGGCAACAAGCTCGCGACCCGGC 386 Query 55080 ACATCAAGGCCGCCCAG 55096 ||||||||| ||| ||| Sbjct 387 ACATCAAGGTCGCGCAG 403 >seq103996 Length=666 Score = 93.3 bits (102), Expect = 2e-14 Identities = 59/63 (94%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 794 GGTAGCTCAATTCGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 853 ||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 457 GGTGGCTCAATT-GGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 399 Query 854 CCC 856 || Sbjct 398 TCC 396 >seq37623 Length=2350 Score = 93.3 bits (102), Expect = 2e-14 Identities = 59/63 (94%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 794 GGTAGCTCAATTCGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 853 ||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1362 GGTGGCTCAATT-GGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 1304 Query 854 CCC 856 || Sbjct 1303 TCC 1301 >seq63746 Length=1499 Score = 89.7 bits (98), Expect = 2e-13 Identities = 134/187 (72%), Gaps = 5/187 (3%) Strand=Plus/Minus Query 48162 GACCGGCGCGAAAGACCGCGGCGACGTCGGCGGCGTGCGGCT---GCACGGCCAGCGTGT 48218 || ||| || || ||| | ||||||||||| || |||||| || |||| || || Sbjct 739 GAACGGGGCAAAGGACAGGGGCGACGTCGGGGGAGTGCGGACCGCGCTCGGCGGCCGCGT 680 Query 48219 CGTGATCGAGTGCAAGAACGTCGCCACCATGTCGCTGCCGCAG-TGGATACGCGAGGCGC 48277 ||| |||||| ||||||||| |||| ||| || | || | ||| | |||||| Sbjct 679 CGTCATCGAGGTGAAGAACGTCACCACGATGAACCT-CAGCGGGTGGGTCAAGGAGGCGG 621 Query 48278 AGATCGAGGCCAGCAACGACGACGCGCTGGTCGGTGTTGTGGTGCACAAGCGGCACGGCA 48337 | ||||| | ||||||||||||| ||| || || || ||||||||||||| |||| Sbjct 620 AAGTCGAGCGCGGCAACGACGACGCTGCGGTTGGCGTCGTCGTGCACAAGCGGCGGGGCA 561 Query 48338 CCGGCGA 48344 ||||| Sbjct 560 AGGGCGA 554 >seq105772 Length=647 Score = 87.8 bits (96), Expect = 7e-13 Identities = 58/63 (92%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 794 GGTAGCTCAATTCGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 853 ||| |||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 557 GGTGGCTCAATT-GGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 499 Query 854 CCC 856 || Sbjct 498 TCC 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196401539569314