Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028834.1 Length=48216 Score E Sequences producing significant alignments: (Bits) Value seq107491 100 9e-17 seq76089 87.8 6e-13 seq100869 80.6 8e-11 >seq107491 Length=627 Score = 100 bits (110), Expect = 9e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328 ||||||| | ||||||||||||||| ||||||||| ||||||| |||||||||| ||| Sbjct 92 TGGTCGGGGCGATAGGATTCGAACCTACGACCCTCTGGTCCCAAACCAGATGCGCTACCA 33 Query 36329 GACTGCGCTACACTCCGA 36346 ||||||||||||| |||| Sbjct 32 GACTGCGCTACACCCCGA 15 >seq76089 Length=1116 Score = 87.8 bits (96), Expect = 6e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328 |||||||||| ||||||||||||||| ||||| || |||| || || |||||| ||| Sbjct 250 TGGTCGGAGTGATAGGATTCGAACCTACGACCCCCTCGTCCCGAACGAGGTGCGCTACCA 191 Query 36329 GACTGCGCTACACTCCGA 36346 | |||||||||||||||| Sbjct 190 GGCTGCGCTACACTCCGA 173 >seq100869 Length=704 Score = 80.6 bits (88), Expect = 8e-11 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 36265 TTTTTGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT 36324 || |||||||| | ||||||||||| | |||||||||||||||||||||||||| Sbjct 489 TTATTGGTCGGGGCGGAGGGATTCGAACCCCCGGCCCTCTGCTCCCAAAGCAGATGCGCT 430 Query 36325 GCCAGACTGCGCTACACTCCGA 36346 |||| ||||||||| | |||| Sbjct 429 ACCAGGCTGCGCTACGCCCCGA 408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153925030068004