Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_028834.1
Length=48216
Score E
Sequences producing significant alignments: (Bits) Value
seq107491 100 9e-17
seq76089 87.8 6e-13
seq100869 80.6 8e-11
>seq107491
Length=627
Score = 100 bits (110), Expect = 9e-17
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328
||||||| | ||||||||||||||| ||||||||| ||||||| |||||||||| |||
Sbjct 92 TGGTCGGGGCGATAGGATTCGAACCTACGACCCTCTGGTCCCAAACCAGATGCGCTACCA 33
Query 36329 GACTGCGCTACACTCCGA 36346
||||||||||||| ||||
Sbjct 32 GACTGCGCTACACCCCGA 15
>seq76089
Length=1116
Score = 87.8 bits (96), Expect = 6e-13
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328
|||||||||| ||||||||||||||| ||||| || |||| || || |||||| |||
Sbjct 250 TGGTCGGAGTGATAGGATTCGAACCTACGACCCCCTCGTCCCGAACGAGGTGCGCTACCA 191
Query 36329 GACTGCGCTACACTCCGA 36346
| ||||||||||||||||
Sbjct 190 GGCTGCGCTACACTCCGA 173
>seq100869
Length=704
Score = 80.6 bits (88), Expect = 8e-11
Identities = 67/82 (82%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 36265 TTTTTGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCT 36324
|| |||||||| | ||||||||||| | ||||||||||||||||||||||||||
Sbjct 489 TTATTGGTCGGGGCGGAGGGATTCGAACCCCCGGCCCTCTGCTCCCAAAGCAGATGCGCT 430
Query 36325 GCCAGACTGCGCTACACTCCGA 36346
|||| ||||||||| | ||||
Sbjct 429 ACCAGGCTGCGCTACGCCCCGA 408
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 153925030068004
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |