Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028843.1 Length=75816 Score E Sequences producing significant alignments: (Bits) Value seq103996 84.2 1e-11 seq37623 84.2 1e-11 seq84105 82.4 4e-11 seq58668 82.4 4e-11 >seq103996 Length=666 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 63766 CGGTAGCTCAACTGGTAGAGCAGTGGTCTCCAAAGCCACCGGTTGCAGGTTCGACTCCTG 63825 |||| |||||| ||||||||||| |||||||||| || | |||||||||||||| ||||| Sbjct 458 CGGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 399 Query 63826 TCCG 63829 |||| Sbjct 398 TCCG 395 >seq37623 Length=2350 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 63766 CGGTAGCTCAACTGGTAGAGCAGTGGTCTCCAAAGCCACCGGTTGCAGGTTCGACTCCTG 63825 |||| |||||| ||||||||||| |||||||||| || | |||||||||||||| ||||| Sbjct 1363 CGGTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 1304 Query 63826 TCCG 63829 |||| Sbjct 1303 TCCG 1300 >seq84105 Length=948 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/60 (92%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 66065 GGGATCGAACCCCGGACCCGCTGATTAAAAGTCAGCTGCTCTACCAACTGAGCTA-GCGC 66123 ||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 726 GGGCTCGAACCTTGGACCCGCTGATTAAGAGTCAGCTGCTCTACCAACTGAGCTATGCGC 785 >seq58668 Length=1734 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/60 (92%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 66065 GGGATCGAACCCCGGACCCGCTGATTAAAAGTCAGCTGCTCTACCAACTGAGCTA-GCGC 66123 ||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 25 GGGTTCGAACCTAGGACCCGCTGATTAAGAGTCAGCTGCTCTACCAACTGAGCTATGCGC 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242091604027533