Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028879.1 Length=43225 Score E Sequences producing significant alignments: (Bits) Value seq18219 89.7 1e-13 seq90483 87.8 5e-13 seq113191 82.4 2e-11 >seq18219 Length=9819 Score = 89.7 bits (98), Expect = 1e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 31257 CTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTTACCGCTT 31316 ||| | ||| ||||||||||||| |||||| ||||||||||||||| ||||||||| ||| Sbjct 5832 CTGGGGCGGAAGGATTCGAACCTCCGAATGTCGGAATCAAAATCCGATGCCTTACCACTT 5891 Query 31317 GGCGACG 31323 ||||||| Sbjct 5892 GGCGACG 5898 >seq90483 Length=846 Score = 87.8 bits (96), Expect = 5e-13 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 31250 TTTTTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTT 31309 ||| | |||| | ||| |||| ||||||||||||||| ||| ||||||| ||| |||||| Sbjct 485 TTTATTGCTGGGGCGGAAGGACTCGAACCTACGAATGGCGGGATCAAAACCCGCTGCCTT 544 Query 31310 ACCGCTTGGCGACGGCGCAAA 31330 ||| |||||||||| | |||| Sbjct 545 ACCACTTGGCGACGCCCCAAA 565 >seq113191 Length=568 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 31257 CTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTTACCGCTT 31316 ||| | ||||||||||||||||||||||| ||| | ||||| ||| ||||||||| ||| Sbjct 141 CTGAGACGGTAGGATTCGAACCTACGAATAGCGGGACCAAAACCCGCTGCCTTACCACTT 200 Query 31317 GGCGACGGCGCAAAA 31331 ||| ||| | ||||| Sbjct 201 GGCCACGTCTCAAAA 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137979166290566