Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028904.1 Length=49452 Score E Sequences producing significant alignments: (Bits) Value seq59665 257 5e-64 >seq59665 Length=1686 Score = 257 bits (284), Expect = 5e-64 Identities = 416/589 (71%), Gaps = 16/589 (3%) Strand=Plus/Plus Query 39168 TCACGGGGCCACTCGCCCGTTCATCTCGAAGGCGAGGTGCGTGATGGGCATCGTGTCGAT 39227 ||| ||||| | ||||||||| ||||||| |||||| | ||||||| ||| Sbjct 782 TCAGGGGGCGATGCGCCCGTTCGCGGTGAAGGCGGCGTGCGTCAGGGGCATCAGCTCGGA 841 Query 39228 GAAGGCCACCTCCATCTCGTCGGCCACCATCTCGATCTCCCGGAGAGGGAAGCTCGGAAC 39287 || ||| |||| |||||||||||||||||||| || | ||||| || | Sbjct 842 CCAGCGGGTCTCGATCTGCTCGGCCACCATCTCGATCTCGCGCTGCGGGAACGAGGGCGC 901 Query 39288 CTTCGCGTTCTCGCGCTG---GGTCCGGAGGCTGAGGAAGCTCATCAGGGAGCGTGCGTT 39344 ||||| |||| | || ||| || || || |||| ||||||| | || ||||| Sbjct 902 CTTCGA---CTCGGGATGCTTGGTGCGCAGCGAGACGAAGTTCATCAGCGCACGGGCGTT 958 Query 39345 GCACGTCGCGTAGAAGGAGGTGTAGATGCCGACCGGCAGGACGTTGCGCGCTACCTCGCG 39404 |||| |||| | ||| | ||| | | | |||||| ||| | ||||| |||||||| Sbjct 959 CATCGTCACGTACATGGACGAGTACAGGTTCAGCGGCAGCACGATCCGCGCCACCTCGCG 1018 Query 39405 GGCGACGCCCGCACCGAGCTGGTTCTGGTACGCCTGCCAGGCGGCG-CGGTAGGCGTCCT 39463 ||||||||||| ||||| | |||| |||| | || || ||| || || Sbjct 1019 AGCGACGCCCGCGTCGAGCATCGACCGGTAGGCCTCGTACGCCGCCACGGACTGCTGCCG 1078 Query 39464 TCGAGGAGGCCGT-GACGCTCATGTACTGGCCGAGGGTGCCCGGCTCGAAGCGGTAGGCA 39522 | | ||||| ||| | || ||| || | |||||||| ||| |||||| Sbjct 1079 C--ACGGCGCCGTCGACCAGCGCGTGCTGCTCGTCGCTGCCCGGCAGGAACTCGTAGGCG 1136 Query 39523 CCGGGCTTGCCGACCTGGACGAGGTTGCGGTCCGAGGCAGGCACGTAGAAGACCGGGTCG 39582 ||||| ||| ||||| || ||||| |||||| | ||||||||||| || ||| || Sbjct 1137 CCGGGGCGGCCCACCTGCACCAGGTTCCGGTCCCGCGACGGCACGTAGAACAC-GGGCCG 1195 Query 39583 -AGCTCCTTGTACCGGCCCGACTCCTCGTTGTAGCTGAAGCCGATGCGGTGGCGGAAGAA 39641 ||||| ||| ||||||||||||||||||||| || |||||||||| || | ||| Sbjct 1196 CAGCTCGCGGTAGCGGCCCGACTCCTCGTTGTAGG---AGGCGATGCGGTGCCGCATGAA 1252 Query 39642 CTCGCGGGCCACGAAGATCGGGGCCTCGATGTAGAAGACGAAGTGGTTGTGCTCGAACGG 39701 ||||||| |||||||||||| |||| | ||||||| | ||||||||||||||| Sbjct 1253 CTCGCGGAACACGAAGATCGGCGCCTGCACGTAGAAGGTCATCGAGTTGTGCTCGAACGG 1312 Query 39702 GGAGCCGTGCCTGTCGCGCATGAGGTAGTTGATGA-GCCCCTTGTCGCG 39749 || ||||| | ||||||||| ||||||||||| | ||||| |||||| Sbjct 1313 CGACCCGTGGCGGTCGCGCATCAGGTAGTTGATCAGGCCCCCGGTCGCG 1361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157873955659852