Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028928.1 Length=53455 Score E Sequences producing significant alignments: (Bits) Value seq81249 113 2e-20 >seq81249 Length=1001 Score = 113 bits (124), Expect = 2e-20 Identities = 199/283 (70%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 41267 GTAGAGCCAGGCGATCGAGTCGCGGATCTCGAAACCGGCGTCCTCGATGGCCACGGTCAG 41326 ||||||||| ||||||||||||||||||||||| |||||||||||||| | | | || Sbjct 1 GTAGAGCCACGCGATCGAGTCGCGGATCTCGAATCCGGCGTCCTCGATTCCGGCAGCGAG 60 Query 41327 CCGGTGCCAGGTGCGCGAACCGCCGAACGCCAACATGTGCCCACCCGGCTTGAGGACCCG 41386 ||||| ||||||| | ||||||||| || | | ||||| || || ||||||| || Sbjct 61 GCGGTGGAAGGTGCGAGTACCGCCGAAGGCGAGGAGCTGCCCGCCGGGTTTGAGGATGCG 120 Query 41387 CAGGCATT--GC-TCCCACATCTCG-AC-----ATCGAAAGCGATGCCCG---AGCCGTC 41434 ||||| | || ||||| |||| || | ||| || | | ||| || Sbjct 121 GAGGCACTCGGCGGCCCACTGCTCGCACCAGTGCTGGAACTCGCCGGGGGTGTAGCGATC 180 Query 41435 CCACTTCTTGCCCATGAATCCCAGCTCGTAGGGCGGGTCTGTGAGAATTGCATCGACGCT 41494 ||| | ||||||||| | || |||||||||| || |||| | || | ||||| Sbjct 181 CCAGCCGTGGCCCATGAAGTCGAGGGCGTAGGGCGGATCGGTGACGACGGCGTGCACGCT 240 Query 41495 GGCGTCTTCTAG-TTCGGTGAGGATGTCTCGGCAGTCCCCGAG 41536 | |||| || ||| | ||||| ||| ||||||| ||||| Sbjct 241 GCCGTCGGGCAGCTTCCG-GAGGACGTCGAGGCAGTCGCCGAG 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170663234902706