Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_028936.1
Length=59052
Score E
Sequences producing significant alignments: (Bits) Value
seq37323 248 3e-61
seq117163 149 2e-31
seq78026 140 1e-28
seq78025 125 3e-24
>seq37323
Length=3330
Score = 248 bits (274), Expect = 3e-61
Identities = 519/768 (68%), Gaps = 33/768 (4%)
Strand=Plus/Minus
Query 53073 GTGGCGTGAGCAGCTCGGCACGCTCGGCGGTGGCAATCACTTCATCGAGTTGTGTGTCGA 53132
|||||| ||||||| ||| |||||||| | ||||| |||||||||||| | | |||||
Sbjct 1901 GTGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCGTCGA 1842
Query 53133 CCACCTTGACCGT----GTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTAGGCAACA 53188
| | ||||| |||||| ||||||||||||| || || || || ||||||
Sbjct 1841 CGA----GACCGATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAACC 1786
Query 53189 AGATCGCGCAGCGGCATATCGCTGCGGCGCAGGGCTA-CTGCCACAACAACGGCCTGCAG 53247
|||||| |||| ||| ||| | ||||||| | | || | | | || | |||
Sbjct 1785 GGATCGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGCTGTGG-ATCCAG 1727
Query 53248 GTGCCTCACCCTGATCTGGCGTATCTCGTCGAGGGCACGCCCGAGTTCGACTCGTACATC 53307
|||| ||| || ||||| || || || ||||||||||| |||||||| ||||||
Sbjct 1726 CTGCCCGACCGCGACCTGGCCTACCTGGTGGAGGGCACGCCGCAGTTCGACCGCTACATC 1667
Query 53308 GTCGAGTTGCGGTGGGCGCAGCGGTTCGCGTACCTGAACCGTGCCGAGATGCTGGATCGT 53367
| ||| |||| ||||||||||| ||||| |||||||| | |||||| |||| ||
Sbjct 1666 GCCGAACTGCGATGGGCGCAGCGCTTCGCCCTGCTGAACCGCGAGGAGATGATGGACCGC 1607
Query 53368 TTCGCGCG---GGCGTTCGCGCACTGGATGGGTTACCCGCCGGGTGACGCCGATTCGCTG 53424
||| ||| || | || |||| | |||| || || | || |
Sbjct 1606 GTCGTGCGCCAGGTCTCCGAGCAC---------------CTCGGTG-CGGCGGT--GCAG 1565
Query 53425 CTGGTGGAGACGATCAACACTCATCACAACTACACGCAGAAGGAAACTCACGGCGGCCGT 53484
| ||| ||||||| || ||||||| ||||||| |||| ||| |||||||
Sbjct 1564 GAGCGCGAGCGGATCAACTGCCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCCGT 1505
Query 53485 GAGGTGTGGTTGACCCGCAAGGGTGCGATCGACGCGAACAAGGGGGTGCGGGGGCTGATT 53544
|| || ||| || |||||||||| || ||| | ||| |||| | | || |||||
Sbjct 1504 GACGTCTGGCTGTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGGCGACCTCGGCCTGATC 1445
Query 53545 CCCGGCAGCATGGGCACCCGCTCGTATGTCGTCACCGGCAAGGGCAATCCCGA-GGCGTT 53603
||||| ||||| ||| ||| || || || || ||| | || || |||| |
Sbjct 1444 CCCGGGTCGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGCGA-CCGGATGGCGCT 1386
Query 53604 GTGCTCGGCGCCGCACGGTGCGGGCCGCCGGTTCTCCCGCAACAAGGCCCGCAAGATGTT 53663
|||| |||||||||| || || ||| | | || || ||||| || ||| |||
Sbjct 1385 CGACTCGTCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGGTCGAAGGCGCGGAAGGCGTT 1326
Query 53664 CACCGTCGAGGATCTGGACGCCCGCATGGCTGGCATTGAGTATCGGCGCGGCGAGGCGTG 53723
||| ||||| | ||| || ||| | ||||| |||| ||| | |||||| |
Sbjct 1325 CACGATCGAGCAGCTGCGCGAGGCGATGACGGGCATCGAGTTCCGGGACACCGAGGCCTT 1266
Query 53724 GGTCGACGAGATTCCCGACGCCTACAAGCCGATTGACGTCGTGATGGCCGACGCGGAGAG 53783
| |||||||| || | |||||||||||||| ||| ||||||||||||||||
Sbjct 1265 CCTGGACGAGATCCCGCAGGCCTACAAGCCGATCGACCAGGTGATGGCCGACGCGGCCGA 1206
Query 53784 CCTCGTATCGGTTGACGTCGAGCTGCGCCAGGTGCTCAACGTGAAGGG 53831
||| || | || | ||||||||| || |||||||||||||
Sbjct 1205 CCTGGTCACCGTGCGGCACACCCTGCGCCAGCTGGTCAACGTGAAGGG 1158
Score = 111 bits (122), Expect = 6e-20
Identities = 163/233 (70%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 52684 GCCAGCGAGGTTGACGACGAGACTCTCGCCCAGGCGCAGCAGACGGCTGACATGCCGTTC 52743
||||||| | | || |||| || |||| |||||||||| ||| | |||||| |||
Sbjct 2668 GCCAGCGTGCTCGAGGACGTCACGCTCGAGCAGGCGCAGCGCACGTCGACCATGCCCTTC 2609
Query 52744 GTGTACCCGCACGTGGCGCTCATGCCTGACGCGCATTTCGGGAAGGGCAGCAGCGTCGGC 52803
| |||||||| |||| || ||||| |||||||| | ||| ||| || ||||||
Sbjct 2608 ATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCCACGGTCGGC 2549
Query 52804 ACGGTGATCCCGACCGAGGGTGNNNNNNNNNNNNNNNCGGTGGGTGTGGACATTGGTTGC 52863
||||||||||||| || | ||||||| |||||||| || |||
Sbjct 2548 TCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACATCGGCTGC 2489
Query 52864 GGCATGATCGCCGCCCGCACG-AGCTACACGGCGACGGACTTGGAGGGCCGCG 52915
|| |||||||| | ||||||| || | || | | | ||| |||||| |||||
Sbjct 2488 GGGATGATCGCGGTCCGCACGCAGTTCGACCG-GTCCGACCTGGAGGCCCGCG 2437
>seq117163
Length=525
Score = 149 bits (164), Expect = 2e-31
Identities = 335/498 (67%), Gaps = 23/498 (5%)
Strand=Plus/Plus
Query 53083 CAGCTCGGCACGCTCGGCGGTGGCAATCACTTCATCGAGTTGTGTGTCGACCACCTTGAC 53142
||||| ||||| || || ||||| |||||||||||| | | || ||| | |||
Sbjct 34 CAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCTCCGTGGACGAGGAGGAC 93
Query 53143 CGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTAGGCAACAAGATCGCGCAGCGG 53202
|| |||||| |||||| ||||| || || || || |||||| |||||||||| |
Sbjct 94 CGGGTGTGGGCGTTCCTCCACTCGGGGAGCCGCGGCGTCGGCAACCGGATCGCGCAGGCG 153
Query 53203 CATATCGCTGCGGCGCAGGGCTACTGCCACAACAACGGCCTGCAGG----TGCCTCACCC 53258
|| |||| | ||||||| | ||| | || | | || | | || ||||
Sbjct 154 CACATCGAGGTCGCGCAGGCC--CTG--ATGACGAAGTGGTGGATCGATCTCCCGCACCG 209
Query 53259 TGATCTGGCGTATCTCGTCGAGGGCACGCCCGAGTTCGACTCGTACATCGTCGAGTTGCG 53318
|| || || || || || ||||| ||| | ||||||||| |||||||| |||| ||||
Sbjct 210 CGACCTCGCCTACCTGGTGGAGGGGACGGCGGAGTTCGACCGGTACATCGCCGAGCTGCG 269
Query 53319 GTGGGCGCAGCGGTTCGCGTACCTGAACCGTGCCGAGATGCTGGATCGTTTCGCGCGGGC 53378
||||||||||||||||||| | ||||| | |||||| |||| || ||| |||
Sbjct 270 GTGGGCGCAGCGGTTCGCGCTGGTCAACCGCGAGGAGATGATGGACCGCGTCGTCCGGCA 329
Query 53379 GTTCGCGCACTGGATGGGTTACCCGCCGGGTGACGCCGATTCGCTGCTGGTGGAGACGAT 53438
| || | | | | || | || || |||| ||| || | |||| |||
Sbjct 330 GCTCTCCGA--GCA--------CCTC--GGCGAGGCCG--TCG-TGGAGCAGGAGCGGAT 374
Query 53439 CAACACTCATCACAACTACACGCAGAAGGAAACTCACGGCGGCCGTGAGGTGTGGTTGAC 53498
|||||| || ||||||| ||||||| |||| ||| |||| | || ||| | |
Sbjct 375 CAACACGCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCAGGACCGTCTGGGTCTC 434
Query 53499 CCGCAAGGGTGCGATCGACGCGAACAAGGGGGTGCGGGGGCTGATTCCCGGCAGCATGGG 53558
|| ||||| |||||| ||| | |||| | | |||||||| ||||| |||||
Sbjct 435 GCGGAAGGGCGCGATCTCGGCGCGCGAGGGCGAGGCCGGGCTGATCCCCGGATCGATGGG 494
Query 53559 CACCCGCTCGTATGTCGT 53576
|||| ||| || || ||
Sbjct 495 CACCGCCTCCTACGTGGT 512
>seq78026
Length=538
Score = 140 bits (154), Expect = 1e-28
Identities = 275/399 (69%), Gaps = 6/399 (2%)
Strand=Plus/Plus
Query 53436 GATCAACACTCATCACAACTACACGCAGAAGGAAACTCACGGCGGCCGTGAGGTGTGGTT 53495
||||||| || ||||||||||| | |||| | ||| |||| || ||| |
Sbjct 54 GATCAACTGCCACCACAACTACACCGCGCAGGAGAAGCACTTCGGCAAGACCGTCTGGCT 113
Query 53496 GACCCGCAAGGGTGCGATCGACGCGAACAAGGGGGTGCGGGGGCTGATTCCCGGCAGCAT 53555
|||||||||| ||||||||||||| | || || |||||||| ||||| ||
Sbjct 114 CTCCCGCAAGGGGGCGATCGACGCGAGCGCCGGCCGGCCCGGGCTGATCCCCGGGTCGAT 173
Query 53556 GGGCACCCGC-TCGTATGTCGTCACCGGCAAGGGCAATCCCGAGGCGTTGTGC-TCGGCG 53613
||| | | || ||||| |||||| |||| |||||| || | ||| || | | ||
Sbjct 174 GGG-AGCGGCGTCGTACGTCGTCGAGGGCAGGGGCAACCCGGTCGCGCTGCACAGCAGC- 231
Query 53614 CCGCACGGTGCGGGCCGCCGGTTCTCCCGCAACAAGGCCCGCAAGATGTTCACCGTCGAG 53673
|||||||| ||||| ||| || ||| || | ||| |||||| |||||| ||
Sbjct 232 CCGCACGGGGCGGGGCGCGAGTACTCGCGGTCCGCGGCGCGCAAGCGCTTCACCCGTGAC 291
Query 53674 GATCTGGACGCCCGCATGGCTGGCATTGAGTATCGGCGCGGCGAGGCGTGGGTCGACGAG 53733
||||| ||||| |||||| | ||||| |||| | || || |||| |||||||
Sbjct 292 GATCTCGACGCGCGCATGACCGGCATCGAGTGGGGCCGGTCGGACGCGTTCCTCGACGAA 351
Query 53734 ATTCCCGACGCCTACAAGCCGATTGACGTCGTGATGGCCGACGCGGAGAGCCTCGT-ATC 53792
|||||||| |||||| || ||||| || ||||||||||||| |||||| | |
Sbjct 352 CACCCCGACGCGTACAAGGACATCGACGTGGTCATGGCCGACGCGGCCGACCTCGTCAGC 411
Query 53793 GGTTGACGTCGAGCTGCGCCAGGTGCTCAACGTGAAGGG 53831
| | | | |||||| ||| | ||||||| |||||
Sbjct 412 GTCCGGC-ACACGCTGCGACAGATCGTCAACGTCAAGGG 449
>seq78025
Length=530
Score = 125 bits (138), Expect = 3e-24
Identities = 195/276 (71%), Gaps = 2/276 (1%)
Strand=Plus/Plus
Query 53073 GTGGCGTGAGCAGCTCGGCACGCTCGGCGGTGGCAATCACTTCATCGAGTTGTGTGTCGA 53132
|||||| |||||| || ||||||| ||||| |||||||||||| | | ||||
Sbjct 256 GTGGCGGCTGCAGCTGGGTTCGCTCGGTTCCGGCAACCACTTCATCGAGGTCAGCCTCGA 315
Query 53133 CCACCTTGACCGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTAGGCAACAAGAT 53192
| | || ||||| |||||| ||||||||||||| || ||||| || || ||||||||| |
Sbjct 316 CGAGCTCGACCGGGTGTGGCTGTTCCTGCACTCGGGCTCGCGCGGGGTGGGCAACAAGCT 375
Query 53193 CGCGCAGCGGCATATCGCTGCGGCGCAGGGCTACTGC-CACAACAACGGCCTGCAGGTGC 53251
|||| ||||| ||| | ||||||| | ||| | | | || || |||
Sbjct 376 CGCGACCCGGCACATCAAGGTCGCGCAGGAGCAGTGCACCCGGCGGTGGATCGC-CCTGC 434
Query 53252 CTCACCCTGATCTGGCGTATCTCGTCGAGGGCACGCCCGAGTTCGACTCGTACATCGTCG 53311
| | || || || || || ||||||||||| || ||||||| || ||| ||| |
Sbjct 435 CGGATCCGGACCTCGCCTACCTCGTCGAGGGTGAGCGCGAGTTCTGGTCCTACCTCGAGG 494
Query 53312 AGTTGCGGTGGGCGCAGCGGTTCGCGTACCTGAACC 53347
|||||||||||||| |||||| | || ||||
Sbjct 495 CCCTGCGGTGGGCGCAGGAGTTCGCCTTCCGCAACC 530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 188545222392652
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