Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028936.1 Length=59052 Score E Sequences producing significant alignments: (Bits) Value seq37323 248 3e-61 seq117163 149 2e-31 seq78026 140 1e-28 seq78025 125 3e-24 >seq37323 Length=3330 Score = 248 bits (274), Expect = 3e-61 Identities = 519/768 (68%), Gaps = 33/768 (4%) Strand=Plus/Minus Query 53073 GTGGCGTGAGCAGCTCGGCACGCTCGGCGGTGGCAATCACTTCATCGAGTTGTGTGTCGA 53132 |||||| ||||||| ||| |||||||| | ||||| |||||||||||| | | ||||| Sbjct 1901 GTGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCGTCGA 1842 Query 53133 CCACCTTGACCGT----GTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTAGGCAACA 53188 | | ||||| |||||| ||||||||||||| || || || || |||||| Sbjct 1841 CGA----GACCGATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAACC 1786 Query 53189 AGATCGCGCAGCGGCATATCGCTGCGGCGCAGGGCTA-CTGCCACAACAACGGCCTGCAG 53247 |||||| |||| ||| ||| | ||||||| | | || | | | || | ||| Sbjct 1785 GGATCGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGCTGTGG-ATCCAG 1727 Query 53248 GTGCCTCACCCTGATCTGGCGTATCTCGTCGAGGGCACGCCCGAGTTCGACTCGTACATC 53307 |||| ||| || ||||| || || || ||||||||||| |||||||| |||||| Sbjct 1726 CTGCCCGACCGCGACCTGGCCTACCTGGTGGAGGGCACGCCGCAGTTCGACCGCTACATC 1667 Query 53308 GTCGAGTTGCGGTGGGCGCAGCGGTTCGCGTACCTGAACCGTGCCGAGATGCTGGATCGT 53367 | ||| |||| ||||||||||| ||||| |||||||| | |||||| |||| || Sbjct 1666 GCCGAACTGCGATGGGCGCAGCGCTTCGCCCTGCTGAACCGCGAGGAGATGATGGACCGC 1607 Query 53368 TTCGCGCG---GGCGTTCGCGCACTGGATGGGTTACCCGCCGGGTGACGCCGATTCGCTG 53424 ||| ||| || | || |||| | |||| || || | || | Sbjct 1606 GTCGTGCGCCAGGTCTCCGAGCAC---------------CTCGGTG-CGGCGGT--GCAG 1565 Query 53425 CTGGTGGAGACGATCAACACTCATCACAACTACACGCAGAAGGAAACTCACGGCGGCCGT 53484 | ||| ||||||| || ||||||| ||||||| |||| ||| ||||||| Sbjct 1564 GAGCGCGAGCGGATCAACTGCCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCCGT 1505 Query 53485 GAGGTGTGGTTGACCCGCAAGGGTGCGATCGACGCGAACAAGGGGGTGCGGGGGCTGATT 53544 || || ||| || |||||||||| || ||| | ||| |||| | | || ||||| Sbjct 1504 GACGTCTGGCTGTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGGCGACCTCGGCCTGATC 1445 Query 53545 CCCGGCAGCATGGGCACCCGCTCGTATGTCGTCACCGGCAAGGGCAATCCCGA-GGCGTT 53603 ||||| ||||| ||| ||| || || || || ||| | || || |||| | Sbjct 1444 CCCGGGTCGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGCGA-CCGGATGGCGCT 1386 Query 53604 GTGCTCGGCGCCGCACGGTGCGGGCCGCCGGTTCTCCCGCAACAAGGCCCGCAAGATGTT 53663 |||| |||||||||| || || ||| | | || || ||||| || ||| ||| Sbjct 1385 CGACTCGTCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGGTCGAAGGCGCGGAAGGCGTT 1326 Query 53664 CACCGTCGAGGATCTGGACGCCCGCATGGCTGGCATTGAGTATCGGCGCGGCGAGGCGTG 53723 ||| ||||| | ||| || ||| | ||||| |||| ||| | |||||| | Sbjct 1325 CACGATCGAGCAGCTGCGCGAGGCGATGACGGGCATCGAGTTCCGGGACACCGAGGCCTT 1266 Query 53724 GGTCGACGAGATTCCCGACGCCTACAAGCCGATTGACGTCGTGATGGCCGACGCGGAGAG 53783 | |||||||| || | |||||||||||||| ||| |||||||||||||||| Sbjct 1265 CCTGGACGAGATCCCGCAGGCCTACAAGCCGATCGACCAGGTGATGGCCGACGCGGCCGA 1206 Query 53784 CCTCGTATCGGTTGACGTCGAGCTGCGCCAGGTGCTCAACGTGAAGGG 53831 ||| || | || | ||||||||| || ||||||||||||| Sbjct 1205 CCTGGTCACCGTGCGGCACACCCTGCGCCAGCTGGTCAACGTGAAGGG 1158 Score = 111 bits (122), Expect = 6e-20 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 52684 GCCAGCGAGGTTGACGACGAGACTCTCGCCCAGGCGCAGCAGACGGCTGACATGCCGTTC 52743 ||||||| | | || |||| || |||| |||||||||| ||| | |||||| ||| Sbjct 2668 GCCAGCGTGCTCGAGGACGTCACGCTCGAGCAGGCGCAGCGCACGTCGACCATGCCCTTC 2609 Query 52744 GTGTACCCGCACGTGGCGCTCATGCCTGACGCGCATTTCGGGAAGGGCAGCAGCGTCGGC 52803 | |||||||| |||| || ||||| |||||||| | ||| ||| || |||||| Sbjct 2608 ATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCCACGGTCGGC 2549 Query 52804 ACGGTGATCCCGACCGAGGGTGNNNNNNNNNNNNNNNCGGTGGGTGTGGACATTGGTTGC 52863 ||||||||||||| || | ||||||| |||||||| || ||| Sbjct 2548 TCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACATCGGCTGC 2489 Query 52864 GGCATGATCGCCGCCCGCACG-AGCTACACGGCGACGGACTTGGAGGGCCGCG 52915 || |||||||| | ||||||| || | || | | | ||| |||||| ||||| Sbjct 2488 GGGATGATCGCGGTCCGCACGCAGTTCGACCG-GTCCGACCTGGAGGCCCGCG 2437 >seq117163 Length=525 Score = 149 bits (164), Expect = 2e-31 Identities = 335/498 (67%), Gaps = 23/498 (5%) Strand=Plus/Plus Query 53083 CAGCTCGGCACGCTCGGCGGTGGCAATCACTTCATCGAGTTGTGTGTCGACCACCTTGAC 53142 ||||| ||||| || || ||||| |||||||||||| | | || ||| | ||| Sbjct 34 CAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCTCCGTGGACGAGGAGGAC 93 Query 53143 CGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTAGGCAACAAGATCGCGCAGCGG 53202 || |||||| |||||| ||||| || || || || |||||| |||||||||| | Sbjct 94 CGGGTGTGGGCGTTCCTCCACTCGGGGAGCCGCGGCGTCGGCAACCGGATCGCGCAGGCG 153 Query 53203 CATATCGCTGCGGCGCAGGGCTACTGCCACAACAACGGCCTGCAGG----TGCCTCACCC 53258 || |||| | ||||||| | ||| | || | | || | | || |||| Sbjct 154 CACATCGAGGTCGCGCAGGCC--CTG--ATGACGAAGTGGTGGATCGATCTCCCGCACCG 209 Query 53259 TGATCTGGCGTATCTCGTCGAGGGCACGCCCGAGTTCGACTCGTACATCGTCGAGTTGCG 53318 || || || || || || ||||| ||| | ||||||||| |||||||| |||| |||| Sbjct 210 CGACCTCGCCTACCTGGTGGAGGGGACGGCGGAGTTCGACCGGTACATCGCCGAGCTGCG 269 Query 53319 GTGGGCGCAGCGGTTCGCGTACCTGAACCGTGCCGAGATGCTGGATCGTTTCGCGCGGGC 53378 ||||||||||||||||||| | ||||| | |||||| |||| || ||| ||| Sbjct 270 GTGGGCGCAGCGGTTCGCGCTGGTCAACCGCGAGGAGATGATGGACCGCGTCGTCCGGCA 329 Query 53379 GTTCGCGCACTGGATGGGTTACCCGCCGGGTGACGCCGATTCGCTGCTGGTGGAGACGAT 53438 | || | | | | || | || || |||| ||| || | |||| ||| Sbjct 330 GCTCTCCGA--GCA--------CCTC--GGCGAGGCCG--TCG-TGGAGCAGGAGCGGAT 374 Query 53439 CAACACTCATCACAACTACACGCAGAAGGAAACTCACGGCGGCCGTGAGGTGTGGTTGAC 53498 |||||| || ||||||| ||||||| |||| ||| |||| | || ||| | | Sbjct 375 CAACACGCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCAGGACCGTCTGGGTCTC 434 Query 53499 CCGCAAGGGTGCGATCGACGCGAACAAGGGGGTGCGGGGGCTGATTCCCGGCAGCATGGG 53558 || ||||| |||||| ||| | |||| | | |||||||| ||||| ||||| Sbjct 435 GCGGAAGGGCGCGATCTCGGCGCGCGAGGGCGAGGCCGGGCTGATCCCCGGATCGATGGG 494 Query 53559 CACCCGCTCGTATGTCGT 53576 |||| ||| || || || Sbjct 495 CACCGCCTCCTACGTGGT 512 >seq78026 Length=538 Score = 140 bits (154), Expect = 1e-28 Identities = 275/399 (69%), Gaps = 6/399 (2%) Strand=Plus/Plus Query 53436 GATCAACACTCATCACAACTACACGCAGAAGGAAACTCACGGCGGCCGTGAGGTGTGGTT 53495 ||||||| || ||||||||||| | |||| | ||| |||| || ||| | Sbjct 54 GATCAACTGCCACCACAACTACACCGCGCAGGAGAAGCACTTCGGCAAGACCGTCTGGCT 113 Query 53496 GACCCGCAAGGGTGCGATCGACGCGAACAAGGGGGTGCGGGGGCTGATTCCCGGCAGCAT 53555 |||||||||| ||||||||||||| | || || |||||||| ||||| || Sbjct 114 CTCCCGCAAGGGGGCGATCGACGCGAGCGCCGGCCGGCCCGGGCTGATCCCCGGGTCGAT 173 Query 53556 GGGCACCCGC-TCGTATGTCGTCACCGGCAAGGGCAATCCCGAGGCGTTGTGC-TCGGCG 53613 ||| | | || ||||| |||||| |||| |||||| || | ||| || | | || Sbjct 174 GGG-AGCGGCGTCGTACGTCGTCGAGGGCAGGGGCAACCCGGTCGCGCTGCACAGCAGC- 231 Query 53614 CCGCACGGTGCGGGCCGCCGGTTCTCCCGCAACAAGGCCCGCAAGATGTTCACCGTCGAG 53673 |||||||| ||||| ||| || ||| || | ||| |||||| |||||| || Sbjct 232 CCGCACGGGGCGGGGCGCGAGTACTCGCGGTCCGCGGCGCGCAAGCGCTTCACCCGTGAC 291 Query 53674 GATCTGGACGCCCGCATGGCTGGCATTGAGTATCGGCGCGGCGAGGCGTGGGTCGACGAG 53733 ||||| ||||| |||||| | ||||| |||| | || || |||| ||||||| Sbjct 292 GATCTCGACGCGCGCATGACCGGCATCGAGTGGGGCCGGTCGGACGCGTTCCTCGACGAA 351 Query 53734 ATTCCCGACGCCTACAAGCCGATTGACGTCGTGATGGCCGACGCGGAGAGCCTCGT-ATC 53792 |||||||| |||||| || ||||| || ||||||||||||| |||||| | | Sbjct 352 CACCCCGACGCGTACAAGGACATCGACGTGGTCATGGCCGACGCGGCCGACCTCGTCAGC 411 Query 53793 GGTTGACGTCGAGCTGCGCCAGGTGCTCAACGTGAAGGG 53831 | | | | |||||| ||| | ||||||| ||||| Sbjct 412 GTCCGGC-ACACGCTGCGACAGATCGTCAACGTCAAGGG 449 >seq78025 Length=530 Score = 125 bits (138), Expect = 3e-24 Identities = 195/276 (71%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 53073 GTGGCGTGAGCAGCTCGGCACGCTCGGCGGTGGCAATCACTTCATCGAGTTGTGTGTCGA 53132 |||||| |||||| || ||||||| ||||| |||||||||||| | | |||| Sbjct 256 GTGGCGGCTGCAGCTGGGTTCGCTCGGTTCCGGCAACCACTTCATCGAGGTCAGCCTCGA 315 Query 53133 CCACCTTGACCGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTAGGCAACAAGAT 53192 | | || ||||| |||||| ||||||||||||| || ||||| || || ||||||||| | Sbjct 316 CGAGCTCGACCGGGTGTGGCTGTTCCTGCACTCGGGCTCGCGCGGGGTGGGCAACAAGCT 375 Query 53193 CGCGCAGCGGCATATCGCTGCGGCGCAGGGCTACTGC-CACAACAACGGCCTGCAGGTGC 53251 |||| ||||| ||| | ||||||| | ||| | | | || || ||| Sbjct 376 CGCGACCCGGCACATCAAGGTCGCGCAGGAGCAGTGCACCCGGCGGTGGATCGC-CCTGC 434 Query 53252 CTCACCCTGATCTGGCGTATCTCGTCGAGGGCACGCCCGAGTTCGACTCGTACATCGTCG 53311 | | || || || || || ||||||||||| || ||||||| || ||| ||| | Sbjct 435 CGGATCCGGACCTCGCCTACCTCGTCGAGGGTGAGCGCGAGTTCTGGTCCTACCTCGAGG 494 Query 53312 AGTTGCGGTGGGCGCAGCGGTTCGCGTACCTGAACC 53347 |||||||||||||| |||||| | || |||| Sbjct 495 CCCTGCGGTGGGCGCAGGAGTTCGCCTTCCGCAACC 530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188545222392652