Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028947.1 Length=62738 Score E Sequences producing significant alignments: (Bits) Value seq63746 105 3e-18 seq103996 95.1 5e-15 seq37623 95.1 5e-15 seq105772 91.5 6e-14 >seq63746 Length=1499 Score = 105 bits (116), Expect = 3e-18 Identities = 138/190 (73%), Gaps = 11/190 (6%) Strand=Plus/Minus Query 45706 GACCGGCGCGAAGGACCGCGGCGACATCGGCGGTGTGCGGCT---GCACGGCCAGCGCGT 45762 || ||| || |||||| | |||||| |||| || |||||| || |||| ||||| Sbjct 739 GAACGGGGCAAAGGACAGGGGCGACGTCGGGGGAGTGCGGACCGCGCTCGGCGGCCGCGT 680 Query 45763 CGTGGTCGAGTGCAAGAACGTCGCGACGATGGCGCTGCCTCAGTGGACGCGT----GAGG 45818 ||| ||||| ||||||||| | |||||| |||||| || | || |||| Sbjct 679 CGTCATCGAGGTGAAGAACGTCACCACGATGAA----CCTCAGCGGGTGGGTCAAGGAGG 624 Query 45819 CGCAGGTCGAGGCTGGCAATGACGACGCGCTGGTTGGCGTCGTGGTGCACAAGCGGCACG 45878 || | |||||| ||||| |||||||| |||||||||||| ||||||||||||| | Sbjct 623 CGGAAGTCGAGCGCGGCAACGACGACGCTGCGGTTGGCGTCGTCGTGCACAAGCGGCGGG 564 Query 45879 GCACCGGCGA 45888 ||| ||||| Sbjct 563 GCAAGGGCGA 554 >seq103996 Length=666 Score = 95.1 bits (104), Expect = 5e-15 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 595 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 649 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 453 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 399 >seq37623 Length=2350 Score = 95.1 bits (104), Expect = 5e-15 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 595 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 649 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1358 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 1304 >seq105772 Length=647 Score = 91.5 bits (100), Expect = 6e-14 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 595 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 649 |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 553 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200310140028271