Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_028953.1
Length=110764
Score E
Sequences producing significant alignments: (Bits) Value
seq58751 105 5e-18
seq93073 98.7 7e-16
seq111358 95.1 9e-15
seq101272 84.2 2e-11
>seq58751
Length=1734
Score = 105 bits (116), Expect = 5e-18
Identities = 198/286 (69%), Gaps = 9/286 (3%)
Strand=Plus/Plus
Query 97236 CGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGA 97295
|||||| | | | | ||| ||| | |||| ||||||||||| || |||| ||||||
Sbjct 854 CGGGCATGTAGAGCATGTCGCCCTTGCCCAGCAGCTGCTCGGCCCCCTGCTCGCCCAGGA 913
Query 97296 TCACCCGGCTATCGGTGAGTGATGCTGTGGCGAA-CGAGAGCCTAGACGGCACGTTGGAT 97354
| || |||| | || || || | ||| ||||| | | ||||| ||||
Sbjct 914 TGGTGCGCGAATCGATCT-TGCTGGTGACGTGAAACGAGATGCGCGTCGGCAGATTGGCC 972
Query 97355 TTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATA 97414
||||| | ||| |||| || || || || |||||||||||||||| || ||| || ||
Sbjct 973 TTGATGACGCCGGTGATGACGTCGACCGACGGCCGCTGCGTCGCCATGATGAGGTGGATG 1032
Query 97415 CCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAG 97474
|| || ||||||||||| || || | || || | |||||| || ||||
Sbjct 1033 CCCGCCGCGCGCGCCTTTTGCGCCAGCCGCTGGATCAGGAACTCGACCTC---CTTG--C 1087
Query 97475 CCGCC--CATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGAT 97518
||||| |||||| ||||| || || |||||||| | ||||||||
Sbjct 1088 CCGCCGTCATCATCAGGTCGGCCAGCTCGTCGACGATCACCACGAT 1133
Score = 93.3 bits (102), Expect = 3e-14
Identities = 181/266 (68%), Gaps = 6/266 (2%)
Strand=Plus/Plus
Query 97564 CATCTGCCGGTACCGGTCATCCATCT---CCACGGTGAGCCACCGCAGCGTCTTAACCGC 97620
|||||| || || ||||| ||||||| |||| | ||| ||||| |||||
Sbjct 1293 CATCTGGCGATAGCGGTCCTCCATCTGCTCCACCGC---CCATTTCAGCGCGCGCACCGC 1349
Query 97621 CTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTACGGGGTGAG 97680
|| | | || |||||||| || || || ||||||||||| ||| |||| | | |
Sbjct 1350 CTTGGCCGGGTCGGTGACGACGGGGGACAGCAGGTGGGGGATGTCGTCGTACATGCTCAA 1409
Query 97681 TTCCACCATCTTCGGGTCGATCATGATGAGTTTGACCCGATCAGGATTGGCTCGGTAGAG 97740
|| | |||||| |||||||||||||| | | | | || || | ||||||||
Sbjct 1410 CTCGAGCATCTTGGGGTCGATCATGATCATCCGGCACTGTTCGGGCGTCAGCCGGTAGAG 1469
Query 97741 CATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTACCTGATCCGGTGGCGCCAGCCAC 97800
|| || | | ||| |||||| | ||||| || || ||||||| ||| || ||
Sbjct 1470 CAGCGACAGGATCATGCAGTTGAGCCCGACCGACTTGCCCGAGCCGGTGGTGCCCGCAAC 1529
Query 97801 CAGCAGGTGCGGCATTTTGGCCAGGT 97826
||||| ||||||||| ||| ||||
Sbjct 1530 CAGCAAGTGCGGCATGGGGGCGAGGT 1555
>seq93073
Length=808
Score = 98.7 bits (108), Expect = 7e-16
Identities = 117/157 (75%), Gaps = 4/157 (3%)
Strand=Plus/Minus
Query 51798 TCCCCCGGATCACCCCGCACGACCTCCGGCACACCTGCGCCTCGCTGGCCATCTCCTCCG 51857
|||| | | |||| | |||||||||||| |||||| ||| || || ||| |||||
Sbjct 194 TCCCGCCGCTCACGCTGCACGACCTCCGACACACCGCCGCGAGCCTCGCGATCCGCTCCG 135
Query 51858 GCGCCAACGTCAAGGCGGTCCAGAACCTTCTGGGACACGCCACCGCGGTGATGACTTTGG 51917
|||| ||||| ||||| |||||| | | || ||||||||| |||| | |||||| | |
Sbjct 134 GCGCGAACGTGAAGGCAGTCCAGCGCATGCTCGGACACGCCTCCGCAGCCATGACTCTCG 75
Query 51918 ACCTCTACGGGCATTTGCTTTCG--GACGATTTGGAC 51952
|| |||||| || || |||| |||||| |||||
Sbjct 74 ACGTCTACGCCGATCTG--TTCGACGACGATCTGGAC 40
>seq111358
Length=586
Score = 95.1 bits (104), Expect = 9e-15
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 97202 GCGCCCTGTATCCGGATGGCACCCCGCGCCCCCACGGGCAGGAATAACCCGTCACCCATT 97261
|||||||| || ||||| || | || |||| |||||||| | |||||| |||
Sbjct 182 GCGCCCTGGATGCGGATCGCCTTGCTGGCGCCCATCGGCAGGAACAGCCCGTCGCCCTGG 123
Query 97262 CCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGTGATGCT 97321
|| | |||| || || ||| ||| |||||||||||||||||| |||||| || |
Sbjct 122 CCGAGCAGCTTGTCCGCGCCGACCTGGTCCAGGATCACCCGGCTGTCGGTGGAGGACGAC 63
Query 97322 GTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACG 97381
|||||| | ||| | |||||||| | ||||| ||||| ||||| || || |||
Sbjct 62 ACGGCGAAGGCGAGGCGGCTGGGCACGTTCGCCTTGATCAGGCCGGTGACCACGTCGACG 3
Query 97382 GA 97383
||
Sbjct 2 GA 1
>seq101272
Length=699
Score = 84.2 bits (92), Expect = 2e-11
Identities = 213/323 (66%), Gaps = 6/323 (2%)
Strand=Plus/Minus
Query 100120 GTCGAGCATGATCGGGTCGACCTCCCCGGCCGGCACGAACTCTACGACGTCAATCACCTT 100179
||||| | || |||||||| || | || |||||||||||| ||||| || ||| |
Sbjct 521 GTCGAACCGGACCGGGTCGATCTGCTCGCTCGGCACGAACTCGACGACCTCGATCTCGCG 462
Query 100180 GTTGGTTTCGCTGGGCAGCTCTGCCAAGTCCTCATTGGTCAGTAGGGCGGTTTGCCCGTC 100239
| | ||| |||||| | | ||| || |||| || | | |||| ||| |
Sbjct 461 GCTCCGCTCGACGGGCAGGGCCTTGAGGTCGTCGCTGGTGAGGACGACGGTGGTGCCGCC 402
Query 100240 GACCTCGAACACCTTGCCCAGATCGGCCGTGTGGACCTGCTCACCGCAGCATTCACAGAT 100299
||||| || ||||| | | ||||| || |||| || ||||| || ||
Sbjct 401 CTCCTCGTACGCCTTGTCGATGTCGGCGTAGTCGACCGTCTTCCCGCACACCTCGCA--- 345
Query 100300 CTTG---TGATACTTGATCCGCCCGCCGTCCTGGACGTGCGCCAGATGGCCCTTCAGGTC 100356
|||| | || ||| |||||||||||| | ||||| || | || ||| |||
Sbjct 344 CTTGCGCTCGTAGCGGATGCGCCCGCCGTCCGCGCCGTGCACCTGGTGCAGGCTCACGTC 285
Query 100357 GTGCTCTTCGGTGGCCGCGTACATCTTCACCGGCACGTTGACCAACCCGAAGTTGACCGC 100416
||| || | ||||| ||| | | ||||| ||||| |||| ||||| ||| |||
Sbjct 284 GTGGTCCTGCGTGGCGCTGTAGAGCCGGACCGGGACGTTCACCAGGCCGAACGTGATCGC 225
Query 100417 GCCTGTCCAAACCGCTCTCATGC 100439
|| ||||| | |||||||||||
Sbjct 224 CCCGGTCCAGATCGCTCTCATGC 202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 353743125961025
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |