Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028953.1 Length=110764 Score E Sequences producing significant alignments: (Bits) Value seq58751 105 5e-18 seq93073 98.7 7e-16 seq111358 95.1 9e-15 seq101272 84.2 2e-11 >seq58751 Length=1734 Score = 105 bits (116), Expect = 5e-18 Identities = 198/286 (69%), Gaps = 9/286 (3%) Strand=Plus/Plus Query 97236 CGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGA 97295 |||||| | | | | ||| ||| | |||| ||||||||||| || |||| |||||| Sbjct 854 CGGGCATGTAGAGCATGTCGCCCTTGCCCAGCAGCTGCTCGGCCCCCTGCTCGCCCAGGA 913 Query 97296 TCACCCGGCTATCGGTGAGTGATGCTGTGGCGAA-CGAGAGCCTAGACGGCACGTTGGAT 97354 | || |||| | || || || | ||| ||||| | | ||||| |||| Sbjct 914 TGGTGCGCGAATCGATCT-TGCTGGTGACGTGAAACGAGATGCGCGTCGGCAGATTGGCC 972 Query 97355 TTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATA 97414 ||||| | ||| |||| || || || || |||||||||||||||| || ||| || || Sbjct 973 TTGATGACGCCGGTGATGACGTCGACCGACGGCCGCTGCGTCGCCATGATGAGGTGGATG 1032 Query 97415 CCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAG 97474 || || ||||||||||| || || | || || | |||||| || |||| Sbjct 1033 CCCGCCGCGCGCGCCTTTTGCGCCAGCCGCTGGATCAGGAACTCGACCTC---CTTG--C 1087 Query 97475 CCGCC--CATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGAT 97518 ||||| |||||| ||||| || || |||||||| | |||||||| Sbjct 1088 CCGCCGTCATCATCAGGTCGGCCAGCTCGTCGACGATCACCACGAT 1133 Score = 93.3 bits (102), Expect = 3e-14 Identities = 181/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 97564 CATCTGCCGGTACCGGTCATCCATCT---CCACGGTGAGCCACCGCAGCGTCTTAACCGC 97620 |||||| || || ||||| ||||||| |||| | ||| ||||| ||||| Sbjct 1293 CATCTGGCGATAGCGGTCCTCCATCTGCTCCACCGC---CCATTTCAGCGCGCGCACCGC 1349 Query 97621 CTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTACGGGGTGAG 97680 || | | || |||||||| || || || ||||||||||| ||| |||| | | | Sbjct 1350 CTTGGCCGGGTCGGTGACGACGGGGGACAGCAGGTGGGGGATGTCGTCGTACATGCTCAA 1409 Query 97681 TTCCACCATCTTCGGGTCGATCATGATGAGTTTGACCCGATCAGGATTGGCTCGGTAGAG 97740 || | |||||| |||||||||||||| | | | | || || | |||||||| Sbjct 1410 CTCGAGCATCTTGGGGTCGATCATGATCATCCGGCACTGTTCGGGCGTCAGCCGGTAGAG 1469 Query 97741 CATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTACCTGATCCGGTGGCGCCAGCCAC 97800 || || | | ||| |||||| | ||||| || || ||||||| ||| || || Sbjct 1470 CAGCGACAGGATCATGCAGTTGAGCCCGACCGACTTGCCCGAGCCGGTGGTGCCCGCAAC 1529 Query 97801 CAGCAGGTGCGGCATTTTGGCCAGGT 97826 ||||| ||||||||| ||| |||| Sbjct 1530 CAGCAAGTGCGGCATGGGGGCGAGGT 1555 >seq93073 Length=808 Score = 98.7 bits (108), Expect = 7e-16 Identities = 117/157 (75%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 51798 TCCCCCGGATCACCCCGCACGACCTCCGGCACACCTGCGCCTCGCTGGCCATCTCCTCCG 51857 |||| | | |||| | |||||||||||| |||||| ||| || || ||| ||||| Sbjct 194 TCCCGCCGCTCACGCTGCACGACCTCCGACACACCGCCGCGAGCCTCGCGATCCGCTCCG 135 Query 51858 GCGCCAACGTCAAGGCGGTCCAGAACCTTCTGGGACACGCCACCGCGGTGATGACTTTGG 51917 |||| ||||| ||||| |||||| | | || ||||||||| |||| | |||||| | | Sbjct 134 GCGCGAACGTGAAGGCAGTCCAGCGCATGCTCGGACACGCCTCCGCAGCCATGACTCTCG 75 Query 51918 ACCTCTACGGGCATTTGCTTTCG--GACGATTTGGAC 51952 || |||||| || || |||| |||||| ||||| Sbjct 74 ACGTCTACGCCGATCTG--TTCGACGACGATCTGGAC 40 >seq111358 Length=586 Score = 95.1 bits (104), Expect = 9e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 97202 GCGCCCTGTATCCGGATGGCACCCCGCGCCCCCACGGGCAGGAATAACCCGTCACCCATT 97261 |||||||| || ||||| || | || |||| |||||||| | |||||| ||| Sbjct 182 GCGCCCTGGATGCGGATCGCCTTGCTGGCGCCCATCGGCAGGAACAGCCCGTCGCCCTGG 123 Query 97262 CCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGTGATGCT 97321 || | |||| || || ||| ||| |||||||||||||||||| |||||| || | Sbjct 122 CCGAGCAGCTTGTCCGCGCCGACCTGGTCCAGGATCACCCGGCTGTCGGTGGAGGACGAC 63 Query 97322 GTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACG 97381 |||||| | ||| | |||||||| | ||||| ||||| ||||| || || ||| Sbjct 62 ACGGCGAAGGCGAGGCGGCTGGGCACGTTCGCCTTGATCAGGCCGGTGACCACGTCGACG 3 Query 97382 GA 97383 || Sbjct 2 GA 1 >seq101272 Length=699 Score = 84.2 bits (92), Expect = 2e-11 Identities = 213/323 (66%), Gaps = 6/323 (2%) Strand=Plus/Minus Query 100120 GTCGAGCATGATCGGGTCGACCTCCCCGGCCGGCACGAACTCTACGACGTCAATCACCTT 100179 ||||| | || |||||||| || | || |||||||||||| ||||| || ||| | Sbjct 521 GTCGAACCGGACCGGGTCGATCTGCTCGCTCGGCACGAACTCGACGACCTCGATCTCGCG 462 Query 100180 GTTGGTTTCGCTGGGCAGCTCTGCCAAGTCCTCATTGGTCAGTAGGGCGGTTTGCCCGTC 100239 | | ||| |||||| | | ||| || |||| || | | |||| ||| | Sbjct 461 GCTCCGCTCGACGGGCAGGGCCTTGAGGTCGTCGCTGGTGAGGACGACGGTGGTGCCGCC 402 Query 100240 GACCTCGAACACCTTGCCCAGATCGGCCGTGTGGACCTGCTCACCGCAGCATTCACAGAT 100299 ||||| || ||||| | | ||||| || |||| || ||||| || || Sbjct 401 CTCCTCGTACGCCTTGTCGATGTCGGCGTAGTCGACCGTCTTCCCGCACACCTCGCA--- 345 Query 100300 CTTG---TGATACTTGATCCGCCCGCCGTCCTGGACGTGCGCCAGATGGCCCTTCAGGTC 100356 |||| | || ||| |||||||||||| | ||||| || | || ||| ||| Sbjct 344 CTTGCGCTCGTAGCGGATGCGCCCGCCGTCCGCGCCGTGCACCTGGTGCAGGCTCACGTC 285 Query 100357 GTGCTCTTCGGTGGCCGCGTACATCTTCACCGGCACGTTGACCAACCCGAAGTTGACCGC 100416 ||| || | ||||| ||| | | ||||| ||||| |||| ||||| ||| ||| Sbjct 284 GTGGTCCTGCGTGGCGCTGTAGAGCCGGACCGGGACGTTCACCAGGCCGAACGTGATCGC 225 Query 100417 GCCTGTCCAAACCGCTCTCATGC 100439 || ||||| | ||||||||||| Sbjct 224 CCCGGTCCAGATCGCTCTCATGC 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353743125961025