Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028954.1 Length=36065 Score E Sequences producing significant alignments: (Bits) Value seq85577 107 4e-19 >seq85577 Length=924 Score = 107 bits (118), Expect = 4e-19 Identities = 175/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 21988 TTCCAGAACGGCGGCAAGGTGGCGAACCTGCGCATTGCCACCACCCGCCGGTGGAAGTCC 22047 |||||||||||||||||||| | |||||||||||| || |||| | ||||||| | Sbjct 739 TTCCAGAACGGCGGCAAGGTCGTGAACCTGCGCATCGCGACCAGCGAGTCGTGGAAGGAC 680 Query 22048 AAGAACACGGGCGAGGTGCAGGAAGAA-ACCGAATGGCATTCGGTCGTTGTGACCAATGA 22106 || | |||||| ||||| || ||||||||||||||||||| | ||| || Sbjct 679 CGCAATTCCGGCGAGCGCAAGGAAAAAGACCGAATGGCATTCGGTCGCGATCTTCAACGA 620 Query 22107 GGCCCTTGTCAACAACGTGGAACGCTATCTGAAAAAAGGTTCCTATGTCCGAATTGAGGG 22166 | ||| | |||| || || || | ||| || || ||| | || || ||||| Sbjct 619 AGGCCTCGCCAACGTCGCCGAGCGTTTCCTGCGCAAGGGGTCCAAGGTTTACATCGAGGG 560 Query 22167 -GCGCTTGCGGACCCGAAAATGGCAGGATCAGAACGGGACCGATCGCTACACAACCGAAA 22225 |||| ||| |||||| ||||||||||||||| | || || |||| ||||| | Sbjct 559 CGCGC-TGCAGACCCGCAAATGGCAGGATCAGCAGGGCCAGGACAAGTACAGCACCGAGA 501 Query 22226 TCGTGGTG 22233 ||||| || Sbjct 500 TCGTGCTG 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115103513185686