Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028978.1 Length=60609 Score E Sequences producing significant alignments: (Bits) Value seq37323 334 3e-87 seq117163 197 5e-46 seq78026 163 1e-35 seq78025 143 1e-29 seq116094 89.7 2e-13 >seq37323 Length=3330 Score = 334 bits (370), Expect = 3e-87 Identities = 543/765 (71%), Gaps = 30/765 (4%) Strand=Plus/Minus Query 55267 GTGGCGGGAGCAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGA 55326 ||||||| ||||||| ||| |||| ||| ||||||| |||||||||||| | | | |||| Sbjct 1901 GTGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCGTCGA 1842 Query 55327 CCACCTCGACCGGGTGTGGTTGTTCCTGCACTCAGGTTCTCGTGGCGTCGGTAACAAGAT 55386 | | ||| ||||||| ||||||||||||| || || ||||| || ||| ||| Sbjct 1841 CGAGACCGATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAACCGGAT 1782 Query 55387 CGCGCAGAAGCACATTCAGGCCGCGCAGGGCTA-TTGCCTCGCCAACGGGCTGCAGGTGC 55445 ||| ||| ||||||| ||| |||||||| | | || | || | || | ||| ||| Sbjct 1781 CGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGC-TGTGGATCCAGCTGC 1723 Query 55446 CGCACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTCG 55505 | || || ||||| ||||| || ||||||||| |||||||||||||| ||| || Sbjct 1722 CCGACCGCGACCTGGCCTACCTGGTGGAGGGCACGCCGCAGTTCGACCGCTACATCGCCG 1663 Query 55506 AATTGCGCTGGGCGCAGCGGTTCG-CGTACTACAACCGCGCCGAGATGATGGACCGATTC 55564 || |||| ||||||||||| |||| | | || ||||||| |||||||||||||| || Sbjct 1662 AACTGCGATGGGCGCAGCGCTTCGCCCTGCT-GAACCGCGAGGAGATGATGGACCGCGTC 1604 Query 55565 GCGCAGGCGTTCAATCATTGGATCGGCGCGCCCGGCTACCCGGCCGAG-ACGATCGTCGA 55623 | || || || | || || || | | |||| | | | || || ||| Sbjct 1603 GTGC--GC---CA-------GGTCTCCGAGCACCTCGGTGCGGCGGTGCAGGAGCG-CGA 1557 Query 55624 GACCATCAACGCGCACCACAACTACACGCAGAAGGAGCAGCACGGCGGCCGTGATGTGTG 55683 | |||||| |||||||||| ||||||| |||||| |||| ||||||||| || || Sbjct 1556 GCGGATCAACTGCCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCCGTGACGTCTG 1497 Query 55684 GCTGACCCGCAAGGGCGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTC 55743 |||| ||||||||||||| ||| | ||| |||| | | |||||||| || || || Sbjct 1496 GCTGTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGGCGACCTCGGCCTGATCCCCGGGTC 1437 Query 55744 GATGGGCACCTGTTCGTATGTCGT-GACCGGCAAGGGTAATCCCGA-GGCGTTGTGCTCA 55801 |||||| ||| || || || || || ||| || | || || |||| | ||| Sbjct 1436 GATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGCGA--CCGGATGGCGCTCGACTCG 1379 Query 55802 GCGCCGCACGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACGGTC 55861 |||||||||| || || ||| | | ||||| |||||||||| ||| ||||||| || Sbjct 1378 TCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGGTCGAAGGCGCGGAAGGCGTTCACGATC 1319 Query 55862 GACGACCT---CGAGGCGCGTATGCAGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTC 55918 || | || ||||||| ||| ||||||||||| ||| | |||||| | | Sbjct 1318 GAGCAGCTGCGCGAGGCG---ATGACGGGCATCGAGTTCCGGGACACCGAGGCCTTCCTG 1262 Query 55919 GACGAGATTCCCGACGCATACAAGCCGATCGACGTCGTGATGCACGACGCCGAGAGCCTG 55978 |||||||| || | || ||||||||||||||| |||||| |||||| | |||| Sbjct 1261 GACGAGATCCCGCAGGCCTACAAGCCGATCGACCAGGTGATGGCCGACGCGGCCGACCTG 1202 Query 55979 GTGTCGGTG-GACGCTGAGCTGCGGCAGCTCTTGAACGTCAAGGG 56022 || | ||| | | | ||||| ||||| | ||||| ||||| Sbjct 1201 GTCACCGTGCGGCAC-ACCCTGCGCCAGCTGGTCAACGTGAAGGG 1158 Score = 140 bits (154), Expect = 1e-28 Identities = 153/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 54878 GCGAGCGAGGTCGACGACCAGACGCTTGCGCAGGCGCAGCAGATCGCCGATC-TGCCTTT 54936 || |||| | |||| ||| ||||| | ||||||||||| | || ||| | |||| || Sbjct 2668 GCCAGCGTGCTCGAGGACGTCACGCTCGAGCAGGCGCAGCGCA-CGTCGACCATGCCCTT 2610 Query 54937 CGTCTATCCGCATGTGGCGCTGATGCCCGATGCGCATTTCGGCAAGGGCAGCAGTGTCGG 54996 | || | ||||| |||| ||||||||||| ||||| | || ||| || ||||| Sbjct 2609 CATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCCACGGTCGG 2550 Query 54997 CACGGTGATCCCGACCGAGGGCGCCGTCATTCCCGCCGCGGTGGGTGTCGATATTGGCTG 55056 | ||||||||||||| |||||||| || || ||||||||||| || || || ||||| Sbjct 2549 CTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACATCGGCTG 2490 Query 55057 CGGCATGATCGCGGCCCGCAC 55077 ||| |||||||||| |||||| Sbjct 2489 CGGGATGATCGCGGTCCGCAC 2469 >seq117163 Length=525 Score = 197 bits (218), Expect = 5e-46 Identities = 335/480 (70%), Gaps = 18/480 (4%) Strand=Plus/Plus Query 55277 CAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGAC 55336 ||||| ||||| ||||| ||||| |||||||||||| | | | | ||| | ||| Sbjct 34 CAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCTCCGTGGACGAGGAGGAC 93 Query 55337 CGGGTGTGGTTGTTCCTGCACTCAGGTTCTCGTGGCGTCGGTAACAAGATCGCGCAGAAG 55396 ||||||||| |||||| ||||| || || |||||||| ||| |||||||||| | Sbjct 94 CGGGTGTGGGCGTTCCTCCACTCGGGGAGCCGCGGCGTCGGCAACCGGATCGCGCAGGCG 153 Query 55397 CACATTCAGGCCGCGCAGGGC-TATTGCCTCGCCAACG-GGCTGCAGGTGCCGCACAAGG 55454 ||||| ||| |||||||| | | || | | | || | | | |||||| | Sbjct 154 CACATCGAGGTCGCGCAGGCCCTGATGAC--GAAGTGGTGGATCGATCTCCCGCACCGCG 211 Query 55455 ATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTCGAATTGCGCT 55514 | || || ||||| || ||||| |||| ||||||||||| ||| ||| ||| |||| | Sbjct 212 ACCTCGCCTACCTGGTGGAGGGGACGGCGGAGTTCGACCGGTACATCGCCGAGCTGCGGT 271 Query 55515 GGGCGCAGCGGTTCGCGTACTACAACCGCGCCGAGATGATGGACCGATTCGCGCAGGCGT 55574 ||||||||||||||||| |||||||| |||||||||||||| ||| | | | Sbjct 272 GGGCGCAGCGGTTCGCGCTGGTCAACCGCGAGGAGATGATGGACCGCGTCGTCCGGCAGC 331 Query 55575 TCAATCATTGGATCGGCGCGCC-CGGCTACCCGGCCGAGACGATCGTCGAGACCATCAAC 55633 || || | || || |||| | | | || | || | ||| |||||| Sbjct 332 TC----------TCCGAGCACCTCGGCGAGGCCGTCGTG--GAGC-AGGAGCGGATCAAC 378 Query 55634 GCGCACCACAACTACACGCAGAAGGAGCAGCACGGCGGCCGTGATGTGTGGCTGACCCGC 55693 |||||||||||| ||||||| |||||| |||| |||| | || ||| | | || Sbjct 379 ACGCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCAGGACCGTCTGGGTCTCGCGG 438 Query 55694 AAGGGCGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACC 55753 |||||||||||| ||| |||||| | | || ||||| || || |||||||||||| Sbjct 439 AAGGGCGCGATCTCGGCGCGCGAGGGCGAGGCCGGGCTGATCCCCGGATCGATGGGCACC 498 >seq78026 Length=538 Score = 163 bits (180), Expect = 1e-35 Identities = 297/428 (69%), Gaps = 15/428 (4%) Strand=Plus/Plus Query 55605 CGGCCGAGA---CGATCG--TCGAGACCATCAACGCGCACCACAACTACACGCAGAAGGA 55659 |||||| || |||||| ||||| |||||| |||||||||||||| | |||| Sbjct 27 CGGCCGCGAGGTCGATCGCATCGAGGAGATCAACTGCCACCACAACTACACCGCGCAGGA 86 Query 55660 GCAGCACGGCGGCCGTGATGTGTGGCTGACCCGCAAGGGCGCGATCGACGCGAACGAGGG 55719 | ||||| |||| || ||||| |||||||||| ||||||||||||| || || Sbjct 87 GAAGCACTTCGGCAAGACCGTCTGGCTCTCCCGCAAGGGGGCGATCGACGCGAGCGCCGG 146 Query 55720 TGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTTCGTATGTCGTGACCGGCAAGGG 55779 || || ||||| || || |||||||| | ||||| ||||| |||| ||| Sbjct 147 CCGGCCCGGGCTGATCCCCGGGTCGATGGGAGCGGCGTCGTACGTCGTCGAGGGCAGGGG 206 Query 55780 TAATCCCGAGGCGTTGTGC-TCAGCGCCGCACGGTGCGGGCCGCCGGTTCTCGCGCACGA 55838 || || | ||| || | |||| |||||||| ||||| ||| || |||||| | Sbjct 207 CAACCCGGTCGCGCTGCACAGCAGC-CCGCACGGGGCGGGGCGCGAGTACTCGCGGTCCG 265 Query 55839 AGGCGCGCAAGCTGTTCACGGTCGACGACCTCGAGGCGCGTATGCAGGGCATCGAGTACC 55898 ||||||||||| ||||| ||||| ||||| ||||| ||| |||||||||| Sbjct 266 CGGCGCGCAAGCGCTTCACCCGTGACGATCTCGACGCGCGCATGACCGGCATCGAGTGGG 325 Query 55899 GCAAGGGCGAGGCGTGGGTCGACGAGATTCCCGACGCATACAAGCCGATCGACGTCGTGA 55958 || | || |||| ||||||| |||||||| |||||| |||||||| || | Sbjct 326 GCCGGTCGGACGCGTTCCTCGACGAACACCCCGACGCGTACAAGGACATCGACGTGGTCA 385 Query 55959 TGCACGACGCCGAGAGCCTGGT----GTCGGTGGACGCTGAGCTGCGGCAGCTCTTGAAC 56014 || |||||| | ||| || ||| | | || | |||||| ||| || | ||| Sbjct 386 TGGCCGACGCGGCCGACCTCGTCAGCGTCCG-GCACAC---GCTGCGACAGATCGTCAAC 441 Query 56015 GTCAAGGG 56022 |||||||| Sbjct 442 GTCAAGGG 449 >seq78025 Length=530 Score = 143 bits (158), Expect = 1e-29 Identities = 199/276 (72%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 55267 GTGGCGGGAGCAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGA 55326 ||||||| |||||| || |||| || |||||| |||||||||||| | ||||||| Sbjct 256 GTGGCGGCTGCAGCTGGGTTCGCTCGGTTCCGGCAACCACTTCATCGAGGTCAGCCTCGA 315 Query 55327 CCACCTCGACCGGGTGTGGTTGTTCCTGCACTCAGGTTCTCGTGGCGTCGGTAACAAGAT 55386 | | ||||||||||||||| ||||||||||||| || || || || || || |||||| | Sbjct 316 CGAGCTCGACCGGGTGTGGCTGTTCCTGCACTCGGGCTCGCGCGGGGTGGGCAACAAGCT 375 Query 55387 CGCGCAGAAGCACATTCAGGCCGCGCAGGGCTATTGC-CTCGCCAACGGGCTGCAGGTGC 55445 |||| |||||| ||| |||||||| | ||| | || | || || ||| Sbjct 376 CGCGACCCGGCACATCAAGGTCGCGCAGGAGCAGTGCACCCGGCGGTGGATCGC-CCTGC 434 Query 55446 CGCACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTCG 55505 || | ||| || || |||||||||||||| | ||||||| |||||||| | Sbjct 435 CGGATCCGGACCTCGCCTACCTCGTCGAGGGTGAGCGCGAGTTCTGGTCCTACCTCGAGG 494 Query 55506 AATTGCGCTGGGCGCAGCGGTTCGCGTACTACAACC 55541 |||| ||||||||| |||||| | | ||||| Sbjct 495 CCCTGCGGTGGGCGCAGGAGTTCGCCTTCCGCAACC 530 >seq116094 Length=536 Score = 89.7 bits (98), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 38381 TGTGCGCGCAGACCGACCCCGAAATCTTCTTTCCAGAGCAGGGCGGCAGCACCCGCGAGG 38440 ||||||| |||||||||||||| ||||| || ||| |||||||| |||||||||| Sbjct 38 TGTGCGCCCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGGCGGCTCGACCCGCGAGG 97 Query 38441 CCAAGCGCATTTGCGGCGGCTGCCAGGTGTCCGACGAGTGCCTCGAATGGGCGCTGAGCC 38500 |||||||| | ||| |||| |||| | | |||||||| || | |||||| || Sbjct 98 CCAAGCGCGTCTGCCAGTCCTGCGAGGTCCGCCAGGAGTGCCTGGAGTACGCGCTGGGCA 157 Query 38501 AGCCCGTCAACCCAACGGGCATTTGGGGCGGCACAACAGAACGAGCACGGCGACGGATCA 38560 | || | | | ||||| |||||||| | ||||| | ||| || || ||| Sbjct 158 A---CGACGAGCGGTTCGGCATCTGGGGCGGTCTCTCCGAACGCGAACGTCGCCGCCTCA 214 Query 38561 AGCGC 38565 ||||| Sbjct 215 AGCGC 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193519718465878