Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_028980.1 Length=62181 Score E Sequences producing significant alignments: (Bits) Value seq89734 127 8e-25 >seq89734 Length=855 Score = 127 bits (140), Expect = 8e-25 Identities = 274/399 (69%), Gaps = 23/399 (6%) Strand=Plus/Plus Query 31585 CTGGGCGATCCGGGGCAGCTCCCGCCCGTGGGCGGCACCCCCTTCTTCA---AGAACAAG 31641 || ||||| |||| |||||| ||||| ||| ||||| | |||||||| || | || Sbjct 279 CTCGGCGACCCGGCGCAGCTGCCGCCGGTGCGCGGCGGCGGCTTCTTCACCGAGGCCGAG 338 Query 31642 CCCGACATCCTGCTCACGGAGATTCACCGCCAGGCCCAGGACAACCCGATCATCTGGATG 31701 |||||| | |||| || ||| | |||||||||||| ||||| |||||||| | | ||| Sbjct 339 CCCGACGTGATGCTGACCGAGGTCCACCGCCAGGCCAAGGACGACCCGATCGTGCGCATG 398 Query 31702 TCCAAGGAGGTCCGCGAGGGCCGCGTGCTCCGCCCCGGCGACTACGGTGCCAGCCGCGTG 31761 | | | ||| ||||||||| || |||| | |||||| ||||| |||||||||||| Sbjct 399 GCGATGACGGTGCGCGAGGGCGGCCGGCTCGCGCTCGGCGAGTACGGCGCCAGCCGCGTG 458 Query 31762 ATTCCCTATGGCCGCCTGCCACGCGAAGAACTCCGGGACATGGTACTGTCCACT--GACC 31819 | || ||||| |||| ||| || | | ||| | || ||| |||| Sbjct 459 GT---CTCGCGCCGC--GCCA-TCGA------CCCGACCCAGGTGC--TCGACTGCGACC 504 Query 31820 AGCTCCTCGTTGGCAGGAACGCCACGAG-AATCACGAGCAATGGACGTGCCCGGGAACTC 31878 || | || || |||| |||| || | || | | ||| || || ||||| ||| Sbjct 505 AGGTGCTGGTGGGCATGAACAAGACCCGCCGTCTCTA-CAACGGGCGGCTGCGGGAGCTC 563 Query 31879 CTCGGGC-GGACGAACGCCCTGCCCCAGGAAGGCGACAAGCTGGTGTGCCTCCGCAACAA 31937 ||| | | || || | |||| || ||||| |||||||| ||||| |||||| | Sbjct 564 GCCGGCCACGTCG-ACCCGATGCCGGCGGTGGGCGAGAAGCTGGTCTGCCTGCGCAACGA 622 Query 31938 CCACGAGGTGGGCCTGCTCAACGGCCAGCTCTGGAAGGT 31976 || | |||||||||||||||| | ||||| ||| Sbjct 623 CCGCACCAAGGGCCTGCTCAACGGCTCGACCTGGACGGT 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198542138393374