Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_029009.1
Length=147589
Score E
Sequences producing significant alignments: (Bits) Value
seq35939 89.7 5e-13
seq21442 87.8 2e-12
seq22223 82.4 7e-11
>seq35939
Length=2552
Score = 89.7 bits (98), Expect = 5e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 45279 TGGAGCATAGCGGACTTGAACCGCTGACATCTACCTTGCAAGGGTAGCGCTCTCCCAACT 45338
||||| |||||||| ||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 1211 TGGAGATAAGCGGACTCGAACCGCTGACATCTGCCTTGCAAGGGCAGCGCTCTACCAACT 1270
Query 45339 GAGCTA-ATGCCCC 45351
|||||| || ||||
Sbjct 1271 GAGCTATATCCCCC 1284
>seq21442
Length=6721
Score = 87.8 bits (96), Expect = 2e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 45279 TGGAGCATAGCGGACTTGAACCGCTGACATCTACCTTGCAAGGGTAGCGCTCTCCCAACT 45338
||||| |||||||| ||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 5165 TGGAGATAAGCGGACTCGAACCGCTGACATCTGCCTTGCAAGGGCAGCGCTCTACCAACT 5224
Query 45339 GAGCTA 45344
||||||
Sbjct 5225 GAGCTA 5230
>seq22223
Length=6299
Score = 82.4 bits (90), Expect = 7e-11
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 45287 AGCGGACTTGAACCGCTGACATCTACCTTGCAAGGGTAGCGCTCTCCCAACTGAGCTA 45344
|||||||| ||||||||||||||| |||||||| || |||||||| ||||||||||||
Sbjct 2115 AGCGGACTCGAACCGCTGACATCTGCCTTGCAAAGGCAGCGCTCTACCAACTGAGCTA 2058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471368363065560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |