Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_029009.1 Length=147589 Score E Sequences producing significant alignments: (Bits) Value seq35939 89.7 5e-13 seq21442 87.8 2e-12 seq22223 82.4 7e-11 >seq35939 Length=2552 Score = 89.7 bits (98), Expect = 5e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 45279 TGGAGCATAGCGGACTTGAACCGCTGACATCTACCTTGCAAGGGTAGCGCTCTCCCAACT 45338 ||||| |||||||| ||||||||||||||| ||||||||||| |||||||| |||||| Sbjct 1211 TGGAGATAAGCGGACTCGAACCGCTGACATCTGCCTTGCAAGGGCAGCGCTCTACCAACT 1270 Query 45339 GAGCTA-ATGCCCC 45351 |||||| || |||| Sbjct 1271 GAGCTATATCCCCC 1284 >seq21442 Length=6721 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 45279 TGGAGCATAGCGGACTTGAACCGCTGACATCTACCTTGCAAGGGTAGCGCTCTCCCAACT 45338 ||||| |||||||| ||||||||||||||| ||||||||||| |||||||| |||||| Sbjct 5165 TGGAGATAAGCGGACTCGAACCGCTGACATCTGCCTTGCAAGGGCAGCGCTCTACCAACT 5224 Query 45339 GAGCTA 45344 |||||| Sbjct 5225 GAGCTA 5230 >seq22223 Length=6299 Score = 82.4 bits (90), Expect = 7e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 45287 AGCGGACTTGAACCGCTGACATCTACCTTGCAAGGGTAGCGCTCTCCCAACTGAGCTA 45344 |||||||| ||||||||||||||| |||||||| || |||||||| |||||||||||| Sbjct 2115 AGCGGACTCGAACCGCTGACATCTGCCTTGCAAAGGCAGCGCTCTACCAACTGAGCTA 2058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471368363065560