Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_029044.1 Length=154434 Score E Sequences producing significant alignments: (Bits) Value seq82408 91.5 1e-13 seq54899 87.8 2e-12 seq96416 84.2 2e-11 seq87011 84.2 2e-11 >seq82408 Length=976 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 114158 ACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGGTTCA 114217 ||||| | | ||||||||||||||| |||| ||||| || || | ||||| | || Sbjct 892 ACGGCCTGATCGTCTACCAGGAGCAGGTGATGGCGACCGCGCAGAAGGTCGCCGGCTACA 833 Query 114218 CCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGAGATCATCA 114277 ||| |||| ||||||| | |||||| || || ||||||||||||| ||||||| || Sbjct 832 CCCTGGGCCAGGCCGACCTGCTGCGCCGGGCGATGGGCAAGAAGAAGAAGGAGATCCTCG 773 Query 114278 ACG 114280 ||| Sbjct 772 ACG 770 >seq54899 Length=627 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 113102 GCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCGA 113161 ||| |||||| ||||| |||| ||| |||| |||| | | ||||||||| || Sbjct 279 GCCAGGGCCGCGGCTCGGCCGCGAACTCCGCGGTCTGCTACCTGCTCGGCATCACCGCGG 220 Query 113162 TCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGACT 113221 ||||| ||||||||| ||||||| |||||||||||| || | || ||| ||| Sbjct 219 TCGACTCGATCAAGTTCGACCTGCCGTTCGAGCGCTTCCTCTCCTCGCTGCGCGACGAGG 160 Query 113222 TCCCCGACATCGACGTCGACTTC 113244 || ||||||||||| |||||| Sbjct 159 AGCCGGACATCGACGTGGACTTC 137 >seq96416 Length=762 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 114154 ACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 114213 |||||||||||| ||||||||||||||||| |||| | | |||| ||| ||| ||| Sbjct 500 ACCTACGGCATCATGGTCTACCAGGAGCAGGTGATGCAGATCGCCCAGGTCATGGGCGGC 441 Query 114214 TTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGA 114262 | ||| ||||| |||||| | |||||| || || |||||||||| Sbjct 440 TATTCCCTGGGCGGGGCCGACCTGCTGCGCCGGGCGATGGGCAAGAAGA 392 >seq87011 Length=895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/147 (73%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 113100 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 113159 |||||| ||||| || |||| || |||||| ||| | |||| ||| | |||||| Sbjct 76 CGGCCCCGGCCGCGGGTCCGGCGCCGGCTCGATGGCGGCGTACGCGATGCGGATCACCGA 135 Query 113160 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGC--CCC 113217 | |||||| | || ||| ||||| |||||||| || | ||||| |||||| | | Sbjct 136 CCTGGACCCGCTGCAGCACGGGCTGATCTTCGAGCGGTTCCTGAACCCCGACCGCGTCTC 195 Query 113218 GACTTCCCCGACATCGACGTCGACTTC 113244 || | |||||| |||||||||||||| Sbjct 196 GA--TGCCCGACTTCGACGTCGACTTC 220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493235786397360