Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq99257 122 3e-23 seq66367 87.8 6e-13 seq108946 86.0 2e-12 seq106785 86.0 2e-12 seq100894 86.0 2e-12 seq108454 82.4 2e-11 seq90126 82.4 2e-11 >seq99257 Length=723 Score = 122 bits (134), Expect = 3e-23 Identities = 159/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 18119 CAATCGGGTCAATGAGATCGCCGAGATCACCTCCGGCTTGAAGTCGCTCGCCAGAGAGCT 18178 ||| || || | ||||| ||||||||||| ||||| ||||| |||| |||| ||||| Sbjct 722 CAACCGCGTGCAGGAGATGACCGAGATCACCACCGGCATGAAGGCGCTGGCCAAGGAGCT 663 Query 18179 CGATATCGCCG-TCGTTTTGCTGTCGCAGCTTAATCGAG-CAG-TCGAGAGCAGAGAGGA 18235 | | |||| || | ||||||||||| ||| | ||| |||||| | | || || Sbjct 662 GGCGGT-GCCGATCATCGCCCTGTCGCAGCTG--TCGCGTCAGGTCGAGAACCGCGACGA 606 Query 18236 TAAGCGACCTCTTCTCTCAGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACAT 18295 ||||| || | ||||| ||||| ||||| || || |||||||||||||||||||| | Sbjct 605 CAAGCGCCCGCAGCTCTCGGACCTGCGCGAATCGGGCTCGATCGAGCAGGACGCCGACGT 546 Query 18296 GATCGCGTTCTTGTTCCGTGAGGCCTACTACCTC 18329 | | |||| ||||||| |||| |||||| || Sbjct 545 GGTGATGTTCGTGTTCCGCGAGGAATACTACGTC 512 >seq66367 Length=774 Score = 87.8 bits (96), Expect = 6e-13 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||||||||||||||| ||||||||||| ||||| ||||||| |||| Sbjct 214 CGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCACAGGTTCAAATC 273 Query 21210 CTGTCTCCGCAACCAGTTACA 21230 ||||| ||||||||| |||| Sbjct 274 CTGTCCCCGCAACCAAATACA 294 >seq108946 Length=612 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||||||||||||||| ||||||||||| ||||| ||||||| |||| Sbjct 195 CGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCACAGGTTCAAATC 136 Query 21210 CTGTCTCCGCAACCA 21224 ||||| ||||||||| Sbjct 135 CTGTCCCCGCAACCA 121 >seq106785 Length=636 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||||||||||||||| ||||||||||| ||||| ||||||| |||| Sbjct 260 CGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCACAGGTTCAAATC 201 Query 21210 CTGTCTCCGCAACCA 21224 ||||| ||||||||| Sbjct 200 CTGTCCCCGCAACCA 186 >seq100894 Length=704 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||||||||||||||| ||||||||||| ||||| ||||||| |||| Sbjct 521 CGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCACAGGTTCAAATC 462 Query 21210 CTGTCTCCGCAACCA 21224 ||||| ||||||||| Sbjct 461 CTGTCCCCGCAACCA 447 >seq108454 Length=618 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||| ||||||||||| ||||||||||| ||||||| |||||| |||| Sbjct 392 CGGGGTGGAGCAGTTCGGTAGCTCGCTGGGCTCATAACCCAGAGGTCGTAGGTTCAAATC 333 Query 21210 CTGTCTCCGCAACCA 21224 ||| | ||||||||| Sbjct 332 CTGCCCCCGCAACCA 318 >seq90126 Length=851 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||| ||||||||||| ||||||||||| ||||||| |||||| |||| Sbjct 197 CGGGGTGGAGCAGTTCGGTAGCTCGCTGGGCTCATAACCCAGAGGTCGTAGGTTCAAATC 256 Query 21210 CTGTCTCCGCAACCA 21224 ||| | ||||||||| Sbjct 257 CTGCCCCCGCAACCA 271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162266975634602