Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1750 107 1e-18 seq124414 96.9 2e-15 seq3441 96.9 2e-15 seq12926 89.7 4e-13 seq11477 89.7 4e-13 seq10846 89.7 4e-13 seq13269 87.8 1e-12 seq8957 84.2 2e-11 seq58168 82.4 5e-11 seq23250 82.4 5e-11 seq7211 82.4 5e-11 >seq1750 Length=74028 Score = 107 bits (118), Expect = 1e-18 Identities = 165/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||||||||||| || || || | || ||||| ||| | Sbjct 61554 ATGCAGATCTTTGTCAAAACTCTTACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 61613 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||||| |||||| ||||||| ||||| ||||| | || | Sbjct 61614 GA-----TACAATCGATAATGTCAAAGCAAAAATACAGGACAAGGAAGGAATCCCACCAG 61668 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGAT 27963 | ||||| || | || |||||||||||||| ||||| || | || | |||| | ||| Sbjct 61669 ATCAGCAGAGGCTGATCTTTGCCGGAAAACAGTTGGAGGATGGTCGTACTCTTG-CTGAT 61727 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||||| ||| | || |||||| | |||||| | || || Sbjct 61728 TACAACATCCAGAAAGAATCCACCCTCCACTTGGTTCTTCGTTTGAGAGGTGG 61780 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||||||||| || || || || | || || |||||| | Sbjct 62010 ATGCAGATATTTGTTAAAACTCTTACAGGAAAGACAATCACTTTGGAAGTTGAAAGCTCT 62069 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| |||||| ||||| |||||| |||| || | Sbjct 62070 GACACAATTGACAAT--GTCAAAGCGAAAATACAAGACAAGGAAGGTATTCCTCCAGATC 62127 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| ||||| || | || || | || | ||| | || |||| Sbjct 62128 AGCAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGAACATTGGCTGACTACA 62187 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || |||||| ||| ||||||||||| | || | ||||| || Sbjct 62188 ACATACAGAAAGAGTCCACCTTGCATTTGGTCCTCCGCCTTCGTGGTGG 62236 >seq124414 Length=715 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||||| ||||| || || || |||| || |||||| || Sbjct 514 ATGCAGATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 455 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || ||| ||||| ||||| ||||| | || || | Sbjct 454 GATACTATTGACAAT--GTGAAAGCGAAAATCCAGGACAAGGAAGGAATCCCACCAGATC 397 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 ||||| || | ||||| || || ||||||||||| || | || | |||| |||| ||| Sbjct 396 AGCAAAGGCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTTG-CCGACTAC 338 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| |||||| || | || ||||| | ||| | ||||| || Sbjct 337 AATATCCAGAAAGAGTCTACCCTCCACTTGGTGCTTCGTCTCCGTGGTGG 288 >seq3441 Length=50379 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||||| ||||| || || || |||| || |||||| || Sbjct 15057 ATGCAGATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 14998 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || ||| ||||| ||||| || || | || || | Sbjct 14997 GATACTATTGACAAT--GTGAAAGCGAAAATCCAGGACAAGGAGGGAATCCCACCAGATC 14940 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 ||||| || | ||||| || || ||||||||||| || | || | |||| |||| ||| Sbjct 14939 AGCAAAGGCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTTG-CCGACTAC 14881 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| |||||| ||| | || ||||| | ||| | ||||| || Sbjct 14880 AATATCCAGAAAGAGTCCACCCTCCACTTGGTGCTTCGTCTCCGTGGTGG 14831 Score = 82.4 bits (90), Expect = 5e-11 Identities = 163/234 (70%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||||||||| || | ||||| ||| ||| ||| | || || ||||| | Sbjct 14374 AATGCAAATTTTTGTGAAGACCTTGACTGGAAAAACTATAACATTGGAAGTTGAAAGTTC 14315 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| ||||| ||| ||| |||||||| || | || ||| Sbjct 14314 TGATACTATTGATAAT--GTCAAGGCAAAGATACAAGACAAAGAGGGGATCCCTCCGGAC 14257 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 ||||| || | || ||||| || || || |||| || | |||| |||| | ||||| Sbjct 14256 CAGCAGAGGCTGATATTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTTG-CTGATTA 14198 Query 27966 CAACATCCAAAAAGA---GAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| || || ||||| || ||||| | ||| ||||||| || Sbjct 14197 TAATATCCAAAAGGAATCGA-CACTT--CACTTGGTGCTTCGTCTGCGTGGTGG 14147 >seq12926 Length=15191 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || || ||| || || | || || || ||| Sbjct 526 AAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACCATCACCCTGGAGGTGGAGAGC 467 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || |||| ||||| || || ||||| ||||| |||| || Sbjct 466 TCCGACACCATAGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGG 409 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || ||||| ||||||||||| |||| |||| | | |||||| Sbjct 408 ACCAGCAGAGGCTCATCTTCGCCGGTAAACAATTGGAGGACGGTCGCACCCTCGCCGATT 349 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| || || || ||| |||||||||| ||| | | ||||| || Sbjct 348 ATAACATTCAGAAGGAATCGACTCTGCATTTGGTGTTGAGGCTCCGTGGAGG 297 >seq11477 Length=17588 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || || ||| || || | || || || ||| Sbjct 516 AAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACCATCACCCTGGAGGTGGAGAGC 457 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || ||||| ||||| || || ||||| ||||| |||| || Sbjct 456 TCCGACACCATAGACAAT--GTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGG 399 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || ||||||||||| || || |||| |||| | | |||||| Sbjct 398 ACCAGCAGAGGCTCATCTTCGCCGGAAAACAGTTAGAGGACGGTCGCACCCTCGCCGATT 339 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| || || || ||| |||||||||| ||| | | ||||| || Sbjct 338 ATAACATTCAGAAGGAATCGACTCTGCATTTGGTGTTGAGGCTCCGTGGAGG 287 >seq10846 Length=19378 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| || || | ||||| ||| ||||| | || || || ||| | Sbjct 11503 AATGCAAATTTTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 11444 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| |||||| || || |||||||| ||| | || ||| Sbjct 11443 TGATACTATTGATAAT--GTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGAC 11386 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || | |||||||| || || || ||||| || | | | | ||| | |||||| Sbjct 11385 CAACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGAACCTTAGCTGATTAC 11326 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| ||| || |||| ||||| |||| ||||| || || Sbjct 11325 AACATTCAAAAGGAGTCGACCCTGCACTTGGTGCTGCGATTGCGAGGAGG 11276 >seq13269 Length=14915 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || |||||||| ||||| || || || | || ||||| ||| | Sbjct 13210 ATGCAGATCTTCGTCAAAACTCTCACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 13269 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| ||||||| ||||| || || | || || | Sbjct 13270 GATACAATAGATAAT--GTCAAAGCAAAAATACAGGACAAGGAGGGAATCCCACCAGACC 13327 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || ||||| ||||| || | || | ||| | ||||||| Sbjct 13328 AGCAGAGGCTGATCTTTGCAGGCAAACAGTTGGAGGATGGTCGAACTTTGGCTGATTACA 13387 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| ||| | || |||||| | |||||| | || || Sbjct 13388 ACATCCAGAAAGAATCCACCCTCCACTTGGTTCTTCGTTTGAGAGGTGG 13436 >seq8957 Length=24100 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || ||||| ||| ||||| | || || || ||| || Sbjct 15505 ATGCAGATCTTTGTGAAAACCCTAACTGGAAAAACGATTACCTTGGAGGTAGAGAGCTCC 15446 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | ||| ||||| || || ||||| || || |||| ||| | Sbjct 15445 GACACGATTGATAAT--GTCAAGGCCAAGATTCAAGACAAGGAGGGGATTCCACCGGACC 15388 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || |||| || ||||| || ||||| || |||| |||| | | | ||||||| Sbjct 15387 AGCAGAGGCTAATCTTCGCCGGGAAGCAATTAGAGGACGGCCGCACCCTCGCTGATTACA 15328 Query 27968 ACATCCAAAAAGAG 27981 |||| || || ||| Sbjct 15327 ACATTCAGAAGGAG 15314 >seq58168 Length=1766 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/199 (70%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || |||||||||||||| || || || || || | || || || ||| Sbjct 297 AAGATGCAGATCTTTGTGAAAACTCTGACAGGCAAGACCATCACCTTGGAGGTGGAGAGC 356 Query 27847 ACCGACG--ATGTACAATCGGTCAAA--CAAAAAATAGCCGACAAAGAAGGTGTTCCGAT 27902 ||||| || |||| || || ||| | ||| || || ||||| ||||| Sbjct 357 TCCGACACCATCGACAAC--GTGAAGGCCAAGATTTAG--GATAAGGAAGGGATTCCGCC 412 Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| ||||| || | || || ||||| ||||||||||| |||| || | | | |||| Sbjct 413 GGACCAGCAGAGGCTCATCTTCGCCGGGAAACAATTGGAGGACGGTCGTACCCTCGCCGA 472 Query 27963 TTACAACATCCAAAAAGAG 27981 ||||||||| || |||||| Sbjct 473 TTACAACATTCAGAAAGAG 491 >seq23250 Length=6169 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/199 (70%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || |||||||||||||| || || || || || | || || || ||| Sbjct 5654 AAGATGCAGATCTTTGTGAAAACTCTGACCGGCAAGACCATCACCTTGGAGGTGGAGAGC 5713 Query 27847 ACCGACG--ATGTACAATCGGTCAAA--CAAAAAATAGCCGACAAAGAAGGTGTTCCGAT 27902 ||||| || |||| || || ||| | ||| || || || || ||||| Sbjct 5714 TCCGACACCATCGACAAC--GTGAAGGCCAAGATTTAG--GATAAGGATGGGATTCCGCC 5769 Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| ||||| || | || || ||||| ||||||||||| |||| || | | | ||||| Sbjct 5770 GGACCAGCAGAGGCTCATCTTCGCCGGGAAACAATTGGAGGACGGTCGTACCCTCTCCGA 5829 Query 27963 TTACAACATCCAAAAAGAG 27981 ||||||||| || |||||| Sbjct 5830 TTACAACATTCAGAAAGAG 5848 >seq7211 Length=36427 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/199 (70%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || |||||||||||||| || || || || || | || || || ||| Sbjct 7529 AAGATGCAGATCTTTGTGAAAACTCTGACCGGCAAGACCATCACGTTGGAGGTGGAGAGC 7588 Query 27847 ACCGACG--ATGTACAATCGGTCAAA--CAAAAAATAGCCGACAAAGAAGGTGTTCCGAT 27902 ||||| || |||| || || ||| | ||| || || ||||| ||||| Sbjct 7589 TCCGACACCATCGACAAC--GTGAAGGCCAAGATTTAG--GATAAGGAAGGGATTCCGCC 7644 Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| ||||| || | || || ||||| ||||||||||| |||| || | | | |||| Sbjct 7645 GGACCAGCAGAGGCTCATCTTCGCCGGGAAACAATTGGAGGACGGTCGTACCCTCGCCGA 7704 Query 27963 TTACAACATCCAAAAAGAG 27981 ||||||||| || |||||| Sbjct 7705 TTACAACATTCAGAAAGAG 7723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355283014755003